Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 170 3e-36 seq1 114 2e-19 seq6 107 3e-17 seq9 102 1e-15 seq4 89.7 8e-12 >seq7 Length=2824016 Score = 170 bits (188), Expect = 3e-36 Identities = 238/331 (72%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| ||||| |||||||| || | ||| Sbjct 1203109 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTT 1203050 Query 794400 CTTGAGCCAAAAGATGGCA-CAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 ||||||||| ||||||| || | || | | ||| ||||| ||||||||||| |||| Sbjct 1203049 CTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCT-GAAGAAGATACCCTCGACGGCAGCAA 1202991 Query 794459 AGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCG 794515 || | || || |||| ||||| || |||| | ||| ||||||||| || | Sbjct 1202990 AGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG------GATCCACTTGATGG 1202937 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 |||| || ||||| || | | | || | || || |||||| ||||||| || Sbjct 1202936 CCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGC 1202877 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | | ||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 1202876 GCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 1202817 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||||||||| || || ||||| Sbjct 1202816 TCTCCATCATGATCTGGAAACCGTAGAAGCA 1202786 Score = 125 bits (138), Expect = 1e-22 Identities = 180/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| |||||||| || ||| |||||| |||||||||||||| | | Sbjct 1203431 TGACACCGGCCTTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 1203372 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | || ||||||| | | ||| ||||||| || Sbjct 1203371 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAA 1203312 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||||| ||||| || ||||| || || ||||||||||| ||| |||| |||||| Sbjct 1203311 GAGCGACG--AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTT 1203254 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| | || || ||| || | |||| | | || |||| |||||| |||||| Sbjct 1203253 CATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGC 1203194 Query 794129 CTCGATGATGAT 794140 || ||||||| Sbjct 1203193 ATCAGTGATGAT 1203182 >seq1 Length=7294945 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || | || |||| ||| ||||| || |||||||| | | |||||||| Sbjct 1233037 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1232978 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||||| || || | ||| || | ||| Sbjct 1232977 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCC 1232918 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || || | || || || |||||||| ||||| Sbjct 1232917 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTC 1232858 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| |||||||||||| ||| ||||| || || || | | | || || Sbjct 1232857 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACC 1232798 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| ||||| Sbjct 1232797 AGCGTTGAAGAGGGTGGG 1232780 Score = 105 bits (116), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||| | ||| || |||||||| || ||||| | || |||||||| || |||||| | | Sbjct 1315053 CCAATTTCCTTGATATCAAGCCTCTTCTCGACGTCGGCTGCAAGACTGTAGCCAACATGA 1315112 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 1315113 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 1315155 >seq6 Length=3085841 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| |||||||||||| |||||||||| || ||| Sbjct 3011399 GTACTTGGTAACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGTTCACCCGGCAG 3011340 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| || |||| ||||||||||| |||| Sbjct 3011339 GATCAGTCGGACGGATGTCTGGATCTCTCGGG 3011308 >seq9 Length=1326442 Score = 102 bits (112), Expect = 1e-15 Identities = 303/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 2411511 AAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTC 2411570 ||||| || ||||||||| | || ||||||||||| |||||||| |||| |||||| || Sbjct 245703 AAAGAGTTTACGCTGGTCGAGACCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCATC 245762 Query 2411571 GAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGA 2411629 ||| |||||| || |||||||| ||| ||||||| ||| | || | ||||| Sbjct 245763 CAGGACCTGCAGGATCGGGTAGAGCAGGCCCGACAGCGGCGCATTGTCCGT-CTGCTTGA 245821 Query 2411630 CCACCTGGGCGGCGGCC--TTTTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAA 2411687 | |||| |||| ||||| || ||| ||||| ||| | | || || ||| | Sbjct 245822 CAACCTCGGCGCCGGCCCTCTTGGCGTCGTGC--TCGGAGATGACCGACGACAGCTTGTA 245879 Query 2411688 GAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACG 2411747 || ||| | |||| ||| || | |||||| |||||| | ||||| | ||| Sbjct 245880 GACGTCCATGATGTACTCGGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAGCTT 245939 Query 2411748 ATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCA 2411807 || | ||||| | | || || ||||| ||||| | || ||| | Sbjct 245940 CTCGGTGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTATTCAAC 245999 Query 2411808 CCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGC 2411867 || ||||||| || || |||| || ||||||||| | |||| | |||||| Sbjct 246000 TCGCAGCTCGACCAGCTCGATGGGCGCTTTCAGGTTGTCGAGGAAGCCGTGGATGTCGGC 246059 Query 2411868 AAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCAC 2411927 | |||||| | || | || || || ||| | | ||| | ||| | | ||| || Sbjct 246060 GAGCAGGATCGTGACATGGCAGCCAGCGGCCAGATACTGGGCGATTTTGATGGCGGGGAC 246119 Query 2411928 AAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCC 2411966 ||||||||| ||| || || ||| || | |||||||| Sbjct 246120 AAAGTAGCCGCAG-TGAGGGCGGCCGGTTGTGGCGGTGCC 246158 >seq4 Length=4000284 Score = 89.7 bits (98), Expect = 8e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 118757 CATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCC 118816 ||| ||| |||||||||| | |||||| | ||| || | | ||| | |||||| Sbjct 556137 CATCTCGGCGATGCGCGGCAGCTTGCTGATGCCAATCACGGCGTTGTTGGGGATGTAGCC 556078 Query 118817 CACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAAT 118876 | |||| |||||| |||||||||| ||| ||||||||||||| |||| | | |||||| Sbjct 556077 AATGTGCATCTTGCCCATAAAGGGCACCAGGTGGTGCTCGCACAGGGAGTAGACGTCAAT 556018 Query 118877 GTCGCGCACGGTCACCATCTCG 118898 ||| || ||||||| ||| Sbjct 556017 GTCCTTGACAATCACCATTTCG 555996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243953385097