Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq7 170 3e-36
seq1 114 2e-19
seq6 107 3e-17
seq9 102 1e-15
seq4 89.7 8e-12
>seq7
Length=2824016
Score = 170 bits (188), Expect = 3e-36
Identities = 238/331 (72%), Gaps = 11/331 (3%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| ||| ||||| |||||||| || | |||
Sbjct 1203109 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTT 1203050
Query 794400 CTTGAGCCAAAAGATGGCA-CAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458
||||||||| ||||||| || | || | | ||| ||||| ||||||||||| ||||
Sbjct 1203049 CTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCT-GAAGAAGATACCCTCGACGGCAGCAA 1202991
Query 794459 AGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCG 794515
|| | || || |||| ||||| || |||| | ||| ||||||||| || |
Sbjct 1202990 AGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG------GATCCACTTGATGG 1202937
Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575
|||| || ||||| || | | | || | || || |||||| ||||||| ||
Sbjct 1202936 CCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGC 1202877
Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635
|| | | ||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 1202876 GCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 1202817
Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || || ||||||||| || || |||||
Sbjct 1202816 TCTCCATCATGATCTGGAAACCGTAGAAGCA 1202786
Score = 125 bits (138), Expect = 1e-22
Identities = 180/252 (71%), Gaps = 4/252 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| |||||||| || ||| |||||| |||||||||||||| | |
Sbjct 1203431 TGACACCGGCCTTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 1203372
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008
| ||||| |||||| | || ||||||| | | ||| ||||||| ||
Sbjct 1203371 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAA 1203312
Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
|||||||| ||||| || ||||| || || ||||||||||| ||| |||| ||||||
Sbjct 1203311 GAGCGACG--AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTT 1203254
Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||||| | || || ||| || | |||| | | || |||| |||||| ||||||
Sbjct 1203253 CATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGC 1203194
Query 794129 CTCGATGATGAT 794140
|| |||||||
Sbjct 1203193 ATCAGTGATGAT 1203182
>seq1
Length=7294945
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| || | || |||| ||| ||||| || |||||||| | | ||||||||
Sbjct 1233037 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1232978
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||| | ||||| || || | ||| || | |||
Sbjct 1232977 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCC 1232918
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| |||||| || | || || | || || || |||||||| |||||
Sbjct 1232917 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTC 1232858
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| |||||||||||| ||| ||||| || || || | | | || ||
Sbjct 1232857 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACC 1232798
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
|| |||||||| |||||
Sbjct 1232797 AGCGTTGAAGAGGGTGGG 1232780
Score = 105 bits (116), Expect = 1e-16
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||| | ||| || |||||||| || ||||| | || |||||||| || |||||| | |
Sbjct 1315053 CCAATTTCCTTGATATCAAGCCTCTTCTCGACGTCGGCTGCAAGACTGTAGCCAACATGA 1315112
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 1315113 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 1315155
>seq6
Length=3085841
Score = 107 bits (118), Expect = 3e-17
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||| ||||| |||||||||||| |||||||||| || |||
Sbjct 3011399 GTACTTGGTAACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGTTCACCCGGCAG 3011340
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
|||||| || |||| ||||||||||| ||||
Sbjct 3011339 GATCAGTCGGACGGATGTCTGGATCTCTCGGG 3011308
>seq9
Length=1326442
Score = 102 bits (112), Expect = 1e-15
Identities = 303/460 (66%), Gaps = 8/460 (2%)
Strand=Plus/Plus
Query 2411511 AAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTC 2411570
||||| || ||||||||| | || ||||||||||| |||||||| |||| |||||| ||
Sbjct 245703 AAAGAGTTTACGCTGGTCGAGACCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCATC 245762
Query 2411571 GAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGA 2411629
||| |||||| || |||||||| ||| ||||||| ||| | || | |||||
Sbjct 245763 CAGGACCTGCAGGATCGGGTAGAGCAGGCCCGACAGCGGCGCATTGTCCGT-CTGCTTGA 245821
Query 2411630 CCACCTGGGCGGCGGCC--TTTTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAA 2411687
| |||| |||| ||||| || ||| ||||| ||| | | || || ||| |
Sbjct 245822 CAACCTCGGCGCCGGCCCTCTTGGCGTCGTGC--TCGGAGATGACCGACGACAGCTTGTA 245879
Query 2411688 GAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACG 2411747
|| ||| | |||| ||| || | |||||| |||||| | ||||| | |||
Sbjct 245880 GACGTCCATGATGTACTCGGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAGCTT 245939
Query 2411748 ATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCA 2411807
|| | ||||| | | || || ||||| ||||| | || ||| |
Sbjct 245940 CTCGGTGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTATTCAAC 245999
Query 2411808 CCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGC 2411867
|| ||||||| || || |||| || ||||||||| | |||| | ||||||
Sbjct 246000 TCGCAGCTCGACCAGCTCGATGGGCGCTTTCAGGTTGTCGAGGAAGCCGTGGATGTCGGC 246059
Query 2411868 AAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCAC 2411927
| |||||| | || | || || || ||| | | ||| | ||| | | ||| ||
Sbjct 246060 GAGCAGGATCGTGACATGGCAGCCAGCGGCCAGATACTGGGCGATTTTGATGGCGGGGAC 246119
Query 2411928 AAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCC 2411966
||||||||| ||| || || ||| || | ||||||||
Sbjct 246120 AAAGTAGCCGCAG-TGAGGGCGGCCGGTTGTGGCGGTGCC 246158
>seq4
Length=4000284
Score = 89.7 bits (98), Expect = 8e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 118757 CATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCC 118816
||| ||| |||||||||| | |||||| | ||| || | | ||| | ||||||
Sbjct 556137 CATCTCGGCGATGCGCGGCAGCTTGCTGATGCCAATCACGGCGTTGTTGGGGATGTAGCC 556078
Query 118817 CACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAAT 118876
| |||| |||||| |||||||||| ||| ||||||||||||| |||| | | ||||||
Sbjct 556077 AATGTGCATCTTGCCCATAAAGGGCACCAGGTGGTGCTCGCACAGGGAGTAGACGTCAAT 556018
Query 118877 GTCGCGCACGGTCACCATCTCG 118898
||| || ||||||| |||
Sbjct 556017 GTCCTTGACAATCACCATTTCG 555996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243953385097
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |