Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 7e-15 seq3 87.8 1e-11 >seq1 Length=7294945 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/141 (76%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 131166 AAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTA 131225 |||| ||| |||||||||| || || ||||| |||||||| || ||||||| || || | Sbjct 2339919 AAATTAAAGTTGTAGTAGCAACCATTGCATTCGGTATGGGAATCGATAAACCAGACGTCA 2339978 Query 131226 GAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTA 131285 || ||||||| || | || ||| |||| | ||||| ||||||||||||| ||| Sbjct 2339979 GATTTGTTATGCACCATGGCATTCCGAAGAGCTTAGAAGGCTATTATCAAGAAACTGGCC 2340038 Query 131286 GAGCAGGTCGTGATGGAGAAA 131306 | || || || ||||| |||| Sbjct 2340039 GTGCGGGCCGAGATGG-GAAA 2340058 >seq3 Length=5619901 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 |||||||||||||| | ||||| |||||||||||| ||||| |||| ||| | || || Sbjct 2015964 GAATTTTTCTTCCACGCCATGGCCGGTCGTGAAGGTCTTATTGATACCGCTGTCAAGACA 2016023 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGAT 435240 || || |||||||| ||||| ||| || ||||| || |||||| Sbjct 2016024 GCCGAGACTGGTTACATTCAGAGACGTCTCGTCAAAGCTCTCGAAGAT 2016071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629270797198