Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 199 4e-46 seq6 136 4e-27 >seq1 Length=7294945 Score = 199 bits (220), Expect = 4e-46 Identities = 1113/1756 (63%), Gaps = 49/1756 (3%) Strand=Plus/Minus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGT 148103 || || |||||| ||| |||||||| || |||||||| || | ||| | | ||| | Sbjct 1234302 TTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGG 1234243 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| | ||||||||||| |||||| | |||||||| | Sbjct 1234242 CGCTGAGAG---ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTG 1234186 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 ||| ||| | || ||| | |||| || | || ||| | || | | Sbjct 1234185 GGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAG 1234126 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 ||| |||| || || | || || | | || || ||||| |||||||| || Sbjct 1234125 AGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCA 1234066 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 || || || ||| | || | |||| || | || || || | || |||||||||| Sbjct 1234065 AGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGG 1234006 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||| | || | || ||||||||| || || |||| |||||| | |||| | Sbjct 1234005 ATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGC 1233946 Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCAC 148463 | || || | ||| || | |||| ||||| || | || | || | |||| Sbjct 1233945 TCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGTGGGCTTGACATCCCAC 1233886 Query 148464 ATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCG 148523 | ||| |||| |||||||| ||||| |||| | | || || || || Sbjct 1233885 AAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCC 1233826 Query 148524 TGCGCCGCCGCCAGTTCGC-AGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAAT 148582 | | || | || || | |||||||| || ||| ||| || ||||| || Sbjct 1233825 TCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGAT 1233767 Query 148583 TTGCCTGTTGAGCAGCGCCGCCGACTCGCT-TTCGTACGGCATACGCAGCCGCACAAACG 148641 |||| |||| | | ||| | | | |||| | || | |||||| | || | Sbjct 1233766 TTGCTTGTTCAACT-CGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAG 1233708 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 |||| ||||| ||||| || || || |||||||| ||||| |||| | ||| | Sbjct 1233707 CGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG 1233648 Query 148702 CGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760 | ||| || ||| |||| ||| |||||||| || || || || || |||||| Sbjct 1233647 C-CTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACC 1233589 Query 148761 TTTGTAATTCTGCGCAGCAATTCAAAATCGTA-----CTT-GTCATCTACGATGCATCGG 148814 || |||| | | ||| | ||| || || ||| || || ||| || || Sbjct 1233588 TTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGA--CAAAGG 1233531 Query 148815 TTCACGGCGAT----AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870 || || || |||||| | ||||| || || ||| || ||||| |||||| Sbjct 1233530 --CAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTC 1233473 Query 148871 TACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930 |||||||| | ||| || ||| || | ||| |||| |||||| || |||||||| Sbjct 1233472 AACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT 1233413 Query 148931 GCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCAC 148990 || |||||| || |||||||| ||||| | || ||||| || ||| | || | Sbjct 1233412 GCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAG 1233353 Query 148991 TATGAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCT 149046 ||| | ||| | ||| || || | ||||| | | | ||||||| || Sbjct 1233352 GATGGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTG----CCCTCCTTCT 1233297 Query 149047 CGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACT 149106 |||| |||||| |||||| | ||||| ||||| || | || || ||||| | Sbjct 1233296 CGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATT 1233237 Query 149107 TGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGG 149166 || |||||||| | | ||| | || | | || |||||||| |||||||| | Sbjct 1233236 CGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAG 1233177 Query 149167 GCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGC 149226 | | |||||| ||| | ||||| || || | ||||| ||| ||| || Sbjct 1233176 GGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGC 1233117 Query 149227 GCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGC 149286 | |||| || | || | || |||||||| ||||| | ||| | || | || | Sbjct 1233116 GGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCAC 1233057 Query 149287 CCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCA 149343 | ||||||| || ||||||||||||| | | ||||||| || ||||||| || Sbjct 1233056 CAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCA 1232997 Query 149344 TAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCA 149403 | || || || ||| || ||||| || | |||| | ||| || || | Sbjct 1232996 TGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGA 1232937 Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC-GC 149460 ||| ||||| | |||||| || || ||| | ||| || || || || ||| Sbjct 1232936 TACGGTGGACGTTCAGGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACATGTCTTT 1232878 Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520 ||| ||| |||||| ||||| ||||||||| ||||||| || ||| ||||| ||| Sbjct 1232877 AGAGTGTC--GTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGG 1232820 Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580 ||| || | | || || || ||| | |||||| ||| || ||||| ||| Sbjct 1232819 ACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATT 1232760 Query 149581 T-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCT 149639 | |||| ||| | | ||| | ||| || || || || |||| || || | ||| Sbjct 1232759 TGCTGG-ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCA 1232701 Query 149640 ATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGC 149699 | || || ||||| | ||| ||||| |||||||| | | ||| ||| || || Sbjct 1232700 ACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGG 1232641 Query 149700 AAGTA--GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 | || ||| || ||||||||| |||| ||||| | ||||| ||||| ||| ||| Sbjct 1232640 AGATATGACCG--CTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGT 1232583 Query 149758 GGTCAATGGCGGCGTC 149773 | ||||||| | ||| Sbjct 1232582 AGACAATGGCAGAGTC 1232567 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || ||||| || |||||| Sbjct 2968790 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTG 2968849 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||||| | Sbjct 2968850 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 2968909 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 2968910 GTCTTGCCCGTCAGGGTCTTCACGAAA 2968936 >seq6 Length=3085841 Score = 136 bits (150), Expect = 4e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||||| || ||| ||| |||||| |||||||| | Sbjct 760470 GGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCAAGCTGCTTAC 760528 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||||||||||||||| || |||||||| |||||| || Sbjct 760529 CAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 760588 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || |||| | ||| || |||| |||| ||| |||||||| |||| Sbjct 760589 TGACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG 760648 Query 133642 TTTTTACGA 133650 | || |||| Sbjct 760649 TCTTGACGA 760657 Score = 134 bits (148), Expect = 1e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || || | | | |||||||| ||||||| Sbjct 760750 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 760808 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| ||||| ||||| |||||||| |||||| || Sbjct 760809 CAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACT 760868 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| | |||||| |||| ||||| ||| |||||||| || | Sbjct 760869 TCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 760928 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || ||||| || ||||||| Sbjct 760929 TCTTGACGAAGATTTGCATGG 760949 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| | Sbjct 1398476 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 1398418 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 1398417 CAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 1398358 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 1398357 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 1398298 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 1398297 TCTTGACGAAAATCTGCAT 1398279 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || ||| ||| ||| || || Sbjct 760234 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC-GTCTTCCAG 760292 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| || ||||| || |||||||| || Sbjct 760293 CTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAAT 760352 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | || | || || | | |||||| || | |||| || ||||| Sbjct 760353 CTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCC 760412 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||| || || || |||||||| Sbjct 760413 GGTCAAAGTCTTGACAAAGATCTGCAT 760439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420661016520