Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1 199 4e-46
seq6 136 4e-27
>seq1
Length=7294945
Score = 199 bits (220), Expect = 4e-46
Identities = 1113/1756 (63%), Gaps = 49/1756 (3%)
Strand=Plus/Minus
Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGT 148103
|| || |||||| ||| |||||||| || |||||||| || | ||| | | ||| |
Sbjct 1234302 TTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGG 1234243
Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163
|||| |||||||| | ||||||||||| |||||| | |||||||| |
Sbjct 1234242 CGCTGAGAG---ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTG 1234186
Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223
||| ||| | || ||| | |||| || | || ||| | || | |
Sbjct 1234185 GGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAG 1234126
Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283
||| |||| || || | || || | | || || ||||| |||||||| ||
Sbjct 1234125 AGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCA 1234066
Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343
|| || || ||| | || | |||| || | || || || | || ||||||||||
Sbjct 1234065 AGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGG 1234006
Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403
||||| | || | || ||||||||| || || |||| |||||| | |||| |
Sbjct 1234005 ATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGC 1233946
Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCAC 148463
| || || | ||| || | |||| ||||| || | || | || | ||||
Sbjct 1233945 TCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGTGGGCTTGACATCCCAC 1233886
Query 148464 ATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCG 148523
| ||| |||| |||||||| ||||| |||| | | || || || ||
Sbjct 1233885 AAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCC 1233826
Query 148524 TGCGCCGCCGCCAGTTCGC-AGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAAT 148582
| | || | || || | |||||||| || ||| ||| || ||||| ||
Sbjct 1233825 TCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGAT 1233767
Query 148583 TTGCCTGTTGAGCAGCGCCGCCGACTCGCT-TTCGTACGGCATACGCAGCCGCACAAACG 148641
|||| |||| | | ||| | | | |||| | || | |||||| | || |
Sbjct 1233766 TTGCTTGTTCAACT-CGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAG 1233708
Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701
|||| ||||| ||||| || || || |||||||| ||||| |||| | ||| |
Sbjct 1233707 CGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG 1233648
Query 148702 CGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760
| ||| || ||| |||| ||| |||||||| || || || || || ||||||
Sbjct 1233647 C-CTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACC 1233589
Query 148761 TTTGTAATTCTGCGCAGCAATTCAAAATCGTA-----CTT-GTCATCTACGATGCATCGG 148814
|| |||| | | ||| | ||| || || ||| || || ||| || ||
Sbjct 1233588 TTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGA--CAAAGG 1233531
Query 148815 TTCACGGCGAT----AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870
|| || || |||||| | ||||| || || ||| || ||||| ||||||
Sbjct 1233530 --CAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTC 1233473
Query 148871 TACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930
|||||||| | ||| || ||| || | ||| |||| |||||| || ||||||||
Sbjct 1233472 AACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT 1233413
Query 148931 GCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCAC 148990
|| |||||| || |||||||| ||||| | || ||||| || ||| | || |
Sbjct 1233412 GCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAG 1233353
Query 148991 TATGAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCT 149046
||| | ||| | ||| || || | ||||| | | | ||||||| ||
Sbjct 1233352 GATGGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTG----CCCTCCTTCT 1233297
Query 149047 CGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACT 149106
|||| |||||| |||||| | ||||| ||||| || | || || ||||| |
Sbjct 1233296 CGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATT 1233237
Query 149107 TGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGG 149166
|| |||||||| | | ||| | || | | || |||||||| |||||||| |
Sbjct 1233236 CGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAG 1233177
Query 149167 GCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGC 149226
| | |||||| ||| | ||||| || || | ||||| ||| ||| ||
Sbjct 1233176 GGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGC 1233117
Query 149227 GCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGC 149286
| |||| || | || | || |||||||| ||||| | ||| | || | || |
Sbjct 1233116 GGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCAC 1233057
Query 149287 CCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCA 149343
| ||||||| || ||||||||||||| | | ||||||| || ||||||| ||
Sbjct 1233056 CAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCA 1232997
Query 149344 TAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCA 149403
| || || || ||| || ||||| || | |||| | ||| || || |
Sbjct 1232996 TGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGA 1232937
Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC-GC 149460
||| ||||| | |||||| || || ||| | ||| || || || || |||
Sbjct 1232936 TACGGTGGACGTTCAGGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACATGTCTTT 1232878
Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520
||| ||| |||||| ||||| ||||||||| ||||||| || ||| ||||| |||
Sbjct 1232877 AGAGTGTC--GTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGG 1232820
Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580
||| || | | || || || ||| | |||||| ||| || ||||| |||
Sbjct 1232819 ACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATT 1232760
Query 149581 T-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCT 149639
| |||| ||| | | ||| | ||| || || || || |||| || || | |||
Sbjct 1232759 TGCTGG-ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCA 1232701
Query 149640 ATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGC 149699
| || || ||||| | ||| ||||| |||||||| | | ||| ||| || ||
Sbjct 1232700 ACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGG 1232641
Query 149700 AAGTA--GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757
| || ||| || ||||||||| |||| ||||| | ||||| ||||| ||| |||
Sbjct 1232640 AGATATGACCG--CTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGT 1232583
Query 149758 GGTCAATGGCGGCGTC 149773
| ||||||| | |||
Sbjct 1232582 AGACAATGGCAGAGTC 1232567
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | |||||||| || || ||||| || ||||||
Sbjct 2968790 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTG 2968849
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||||| || ||| || || | ||||| |
Sbjct 2968850 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 2968909
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 2968910 GTCTTGCCCGTCAGGGTCTTCACGAAA 2968936
>seq6
Length=3085841
Score = 136 bits (150), Expect = 4e-27
Identities = 145/189 (77%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || |||||||||| || ||| ||| |||||| |||||||| |
Sbjct 760470 GGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCAAGCTGCTTAC 760528
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||| |||||||||||||||||||| || |||||||| |||||| ||
Sbjct 760529 CAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 760588
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| || |||| | ||| || |||| |||| ||| |||||||| ||||
Sbjct 760589 TGACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG 760648
Query 133642 TTTTTACGA 133650
| || ||||
Sbjct 760649 TCTTGACGA 760657
Score = 134 bits (148), Expect = 1e-26
Identities = 152/201 (76%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| ||| || || | | | |||||||| |||||||
Sbjct 760750 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 760808
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || || ||||||||||| ||||| ||||| |||||||| |||||| ||
Sbjct 760809 CAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACT 760868
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||||| | |||||| |||| ||||| ||| |||||||| || |
Sbjct 760869 TCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 760928
Query 133642 TTTTTACGAAAATCTGCATGG 133662
| || ||||| || |||||||
Sbjct 760929 TCTTGACGAAGATTTGCATGG 760949
Score = 122 bits (134), Expect = 8e-23
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| |
Sbjct 1398476 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 1398418
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || | ||||||||||| || || ||||| |||||||| |||||| ||
Sbjct 1398417 CAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 1398358
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||||||| | |||||| || | ||||| || || || || || |
Sbjct 1398357 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 1398298
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 1398297 TCTTGACGAAAATCTGCAT 1398279
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||| ||| ||||| || ||||| |||| || ||| ||| ||| || ||
Sbjct 760234 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC-GTCTTCCAG 760292
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || ||| | ||||| ||||||||||| || ||||| || |||||||| ||
Sbjct 760293 CTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAAT 760352
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||| ||||| | || | || || | | |||||| || | |||| || |||||
Sbjct 760353 CTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCC 760412
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| ||| || || || ||||||||
Sbjct 760413 GGTCAAAGTCTTGACAAAGATCTGCAT 760439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420661016520
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