Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 seq6 95.1 1e-14 >seq7 Length=2824016 Score = 113 bits (124), Expect = 4e-20 Identities = 343/516 (66%), Gaps = 17/516 (3%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| | || || ||||| | |||||||| ||||||||| || | || | | | Sbjct 1202909 CCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCC 1202968 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG-GCAGT-T 46878 | || ||||| | || || || || ||||| || | | || ||| | | || | Sbjct 1202969 TTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGG--TATCTTCTTCAGCGGAGCCT 1203026 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 ||||| |||| || | | || | | ||| | ||||| |||||||| ||| |||| Sbjct 1203027 TTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACG 1203086 Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACG 46997 || | ||||| || ||||| || || ||||| |||||||| || || || | | | Sbjct 1203087 AGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCTTGCCTGCT----CCACTCT 1203142 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAG 47056 | | |||| | | | ||| | |||| ||| || | | || || || || Sbjct 1203143 CACCTGAAGAACCGCGCCAGCAAGGAGATTATCCGTGAA-ATCATCACTGATGCCGTCAG 1203201 Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 ||||| | || || || || | ||| || ||| || |||||||||||||||| || Sbjct 1203202 AATCGAGCAAGAATTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGC-CA 1203260 Query 47117 GTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC 47175 || ||| | || ||||||||||| || ||||||||| | || || || |||| Sbjct 1203261 CCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGG-CAAC 1203319 Query 47176 CGAAATATTT--TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGG 47233 || |||| | | ||| || || ||||| || ||| | ||||| || || | || Sbjct 1203320 GAGAAGATTTACAAGTCCTC-CAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGG 1203378 Query 47234 CAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| ||||| || |||||||| || ||||| ||||| Sbjct 1203379 CAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 1203414 >seq6 Length=3085841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||||||| ||| Sbjct 1398500 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 1398441 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | | |||| | ||||| || || || || ||||| Sbjct 1398440 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 1398381 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 1398380 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1398321 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 1398320 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1398279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611062974280