Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=5619901 Score = 116 bits (128), Expect = 4e-21 Identities = 197/277 (71%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC-GCAGTCCACGTACCTGGCCCCAA 147289 ||||||||| ||||||| ||| |||||| ||| ||| || || || || |||| Sbjct 1519826 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCTGTTTGAGCA-TCGACATAGTCTGCGCCAA 1519884 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 |||||| ||||||||||||||| || || |||||||||||| | | ||| | | ||| Sbjct 1519885 AGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGGGTG-AGC 1519943 Query 147350 CCG-CCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC--CTTGG 147406 ||| | | | ||| |||||| |||| |||| | |||||||||| || || | | | Sbjct 1519944 CCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCCACGTCG 1520003 Query 147407 CGGAGAGCTCCTTA-GAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACC 147465 | ||| || | | ||| ||| |||| |||||||||||| ||||| | | || Sbjct 1520004 CTGAGGGCGGCGGACGAG---GTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGACG 1520060 Query 147466 CCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 | | ||||| | ||||||||| |||||||||| Sbjct 1520061 GCGCGGAGGAAGACTCGCTTGGTGGTGAGCAGGGGGA 1520097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487832247200