Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 215 7e-50 seq1 120 4e-21 seq4 96.9 5e-14 seq6 87.8 3e-11 >seq7 Length=2824016 Score = 215 bits (238), Expect = 7e-50 Identities = 360/509 (71%), Gaps = 16/509 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| ||||| ||||||||||| ||| | || | Sbjct 1202572 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATC 1202630 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 1202631 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 1202690 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| || | || || ||| || ||| ||| ||||| || ||||||||||| || Sbjct 1202691 CTCACATCTTGGCTTTCTTT-GCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAG 1202749 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| || | || ||||| ||||||||| Sbjct 1202750 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 1202809 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || |||||||| || || |||||||||||||||||||| | Sbjct 1202810 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC 1202869 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | || || ||||||| |||||| || || | || | | | || ||||| Sbjct 1202870 AGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCT 1202929 Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 |||||||| || ||||||||| ||||||| ||| | |||||| |||| || | Sbjct 1202930 GACTGGGCCATCAAGTGGATCCAGGACAAGGA----CTCTTC-CTTTGCTCAGCGCCTTG 1202984 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTTTGG 1456246 | | |||||| | ||||||||| ||||| ||| | | || | || | ||||||| ||| Sbjct 1202985 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTC-AGCGGAGCCTTTGCCTCCATCTTCTGG 1203043 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| | || |||||||| || || Sbjct 1203044 CTCAAGAAGAGAGGTCTCATGCCTGGCCT 1203072 Score = 113 bits (124), Expect = 6e-19 Identities = 180/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||| |||||| |||| || | | |||| | || || || Sbjct 1203182 ATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCGAGGCTCTCCCCTGTGCT 1203241 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||||||||| || ||| ||||||||||| ||| || ||||| || | Sbjct 1203242 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATTGAGTTT-GTTGCCGATCGTC 1203299 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||||| || || ||| || ||||| ||| | | ||||||| || | ||| Sbjct 1203300 TGCTCGTCGCTCTTGGCAACG-AGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATG 1203358 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| |||||| || || ||||||||| Sbjct 1203359 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAA 1203418 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 1203419 AAGGCCGGTGTCA 1203431 >seq1 Length=7294945 Score = 120 bits (132), Expect = 4e-21 Identities = 332/505 (66%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| ||||||| | ||| ||||||||| |||| ||||| Sbjct 1232552 CACAAGGAGGAGCTTGACTCTGCCATTGTCTACGACCGAGACTTCAACTACCAATACTTC 1232611 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTA---CCTGACCAAAGTGCGCGATATTGTCGTCGAG 259798 || | ||| || ||||| || ||||| | || | ||||| | || Sbjct 1232612 GGCTTCAAGACACTGGAGCGGTCATATCTCCTGAAGCTTGATGGCAAGATTGTTG---AG 1232668 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 || || ||| | ||| | |||||||| || ||||| ||||| || ||| Sbjct 1232669 CGACCACAGCACATGATTATGCGTGTGGCTGTTGGC--------GTTTGGGGA----GAC 1232716 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTC 259917 || | |||| || || | || ||| | |||||| ||||| || || ||| Sbjct 1232717 AACA---TTGAGCGTGTCCTTGAGACATACCACCTCATGTC-CAGCAAATTCTTTACCCA 1232772 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || | ||||| ||||| || || || || || | | ||| || || ||||| || Sbjct 1232773 TGCCTCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCT 1232832 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | |||||||||||| ||| || ||||| ||||| ||||| || ||| || || | Sbjct 1232833 GGTGGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCAT 1232892 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 || |||||| ||| || || ||||| | || ||| | || || ||||| | Sbjct 1232893 GATTTCCAAGATGGCTGGTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTC 1232952 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 ||| | || ||||||||||| |||||||| | | ||||||||||| || || || Sbjct 1232953 TTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAA 1233012 Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182 | |||| || | |||||||||||| Sbjct 1233013 CAACACTGCCAGATACGTCGACCAG 1233037 >seq4 Length=4000284 Score = 96.9 bits (106), Expect = 5e-14 Identities = 191/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 2133426 GGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATG 2133485 ||||||||| | |||||||||||||| | ||| || |||| || ||||||||| Sbjct 555862 GGCGAGGATCCCAACCGCGAGGGCCTCCTCGCCACGCCGCAGCGCTACGCAAAGGCCATG 555921 Query 2133486 GTGGAGCGCACGCGCGGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTT 2133544 |||| || ||| | | | | ||| | | ||| ||| ||||||| | || Sbjct 555922 CTGGACTTTACAAAGGGCTACCAGGAGGACA-TCTCGGACATTGTCAACGGCGCCATTTT 555980 Query 2133545 TGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGA 2133604 | |||| |||| ||||||| || || |||||| | | |||| ||||||| Sbjct 555981 CCAAGAGGGCCACAACGAAATGGTGATTGTCAAGGACATTGACGTCTACTCCCTGTGCGA 556040 Query 2133605 GCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGAT 2133664 |||||||||| |||||||||| |||||| ||| | |||||| | ||| | | Sbjct 556041 GCACCACCTGGTGCCCTTTATGGGCAAGATGCACATTGGCTACATCCCCAACAACGCCGT 556100 Query 2133665 CATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTT 2133704 || || | |||||| | |||||||||| ||| |||||| Sbjct 556101 GATTGGCATCAGCAAGCTGCCGCGCATCGCCGAGATGTTT 556140 >seq6 Length=3085841 Score = 87.8 bits (96), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| |||| || |||||| ||| || |||||||||| |||||||||| Sbjct 3011310 CGAGAGATCCAGACATCCGTCCGACTGATCCTGCCGGGTGAACTGGCCAAGCACGCCGTC 3011369 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 3011370 TCCGAGGGCACCA 3011382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808981607726