Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq7 215 7e-50
seq1 120 4e-21
seq4 96.9 5e-14
seq6 87.8 3e-11
>seq7
Length=2824016
Score = 215 bits (238), Expect = 7e-50
Identities = 360/509 (71%), Gaps = 16/509 (3%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| |||||||||||||| ||||| ||||||||||| ||| | || |
Sbjct 1202572 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATC 1202630
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | || | | ||||| ||| ||| ||| |||||| | ||||||
Sbjct 1202631 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 1202690
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| || | || || ||| || ||| ||| ||||| || ||||||||||| ||
Sbjct 1202691 CTCACATCTTGGCTTTCTTT-GCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAG 1202749
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
|| || | ||||| || | || ||||| || | || ||||| |||||||||
Sbjct 1202750 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 1202809
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| || |||||||| || || |||||||||||||||||||| |
Sbjct 1202810 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC 1202869
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131
| || || ||||||| |||||| || || | || | | | || |||||
Sbjct 1202870 AGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCT 1202929
Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188
|||||||| || ||||||||| ||||||| ||| | |||||| |||| || |
Sbjct 1202930 GACTGGGCCATCAAGTGGATCCAGGACAAGGA----CTCTTC-CTTTGCTCAGCGCCTTG 1202984
Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTTTGG 1456246
| | |||||| | ||||||||| ||||| ||| | | || | || | ||||||| |||
Sbjct 1202985 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTC-AGCGGAGCCTTTGCCTCCATCTTCTGG 1203043
Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||| | || |||||||| || ||
Sbjct 1203044 CTCAAGAAGAGAGGTCTCATGCCTGGCCT 1203072
Score = 113 bits (124), Expect = 6e-19
Identities = 180/253 (71%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| || |||||| |||||| |||| || | | |||| | || || ||
Sbjct 1203182 ATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCGAGGCTCTCCCCTGTGCT 1203241
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||||||||| || ||| ||||||||||| ||| || ||||| || |
Sbjct 1203242 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATTGAGTTT-GTTGCCGATCGTC 1203299
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||||| || || ||| || ||||| ||| | | ||||||| || | |||
Sbjct 1203300 TGCTCGTCGCTCTTGGCAACG-AGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATG 1203358
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| |||||| || || |||||||||
Sbjct 1203359 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAA 1203418
Query 1456762 AAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 1203419 AAGGCCGGTGTCA 1203431
>seq1
Length=7294945
Score = 120 bits (132), Expect = 4e-21
Identities = 332/505 (66%), Gaps = 23/505 (5%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| || ||| ||||||| | ||| ||||||||| |||| |||||
Sbjct 1232552 CACAAGGAGGAGCTTGACTCTGCCATTGTCTACGACCGAGACTTCAACTACCAATACTTC 1232611
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTA---CCTGACCAAAGTGCGCGATATTGTCGTCGAG 259798
|| | ||| || ||||| || ||||| | || | ||||| | ||
Sbjct 1232612 GGCTTCAAGACACTGGAGCGGTCATATCTCCTGAAGCTTGATGGCAAGATTGTTG---AG 1232668
Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858
|| || ||| | ||| | |||||||| || ||||| ||||| || |||
Sbjct 1232669 CGACCACAGCACATGATTATGCGTGTGGCTGTTGGC--------GTTTGGGGA----GAC 1232716
Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTC 259917
|| | |||| || || | || ||| | |||||| ||||| || || |||
Sbjct 1232717 AACA---TTGAGCGTGTCCTTGAGACATACCACCTCATGTC-CAGCAAATTCTTTACCCA 1232772
Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977
|| | ||||| ||||| || || || || || | | ||| || || ||||| ||
Sbjct 1232773 TGCCTCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCT 1232832
Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037
| |||||||||||| ||| || ||||| ||||| ||||| || ||| || || |
Sbjct 1232833 GGTGGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCAT 1232892
Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097
|| |||||| ||| || || ||||| | || ||| | || || ||||| |
Sbjct 1232893 GATTTCCAAGATGGCTGGTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTC 1232952
Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157
||| | || ||||||||||| |||||||| | | ||||||||||| || || ||
Sbjct 1232953 TTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAA 1233012
Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182
| |||| || | ||||||||||||
Sbjct 1233013 CAACACTGCCAGATACGTCGACCAG 1233037
>seq4
Length=4000284
Score = 96.9 bits (106), Expect = 5e-14
Identities = 191/280 (68%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 2133426 GGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATG 2133485
||||||||| | |||||||||||||| | ||| || |||| || |||||||||
Sbjct 555862 GGCGAGGATCCCAACCGCGAGGGCCTCCTCGCCACGCCGCAGCGCTACGCAAAGGCCATG 555921
Query 2133486 GTGGAGCGCACGCGCGGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTT 2133544
|||| || ||| | | | | ||| | | ||| ||| ||||||| | ||
Sbjct 555922 CTGGACTTTACAAAGGGCTACCAGGAGGACA-TCTCGGACATTGTCAACGGCGCCATTTT 555980
Query 2133545 TGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGA 2133604
| |||| |||| ||||||| || || |||||| | | |||| |||||||
Sbjct 555981 CCAAGAGGGCCACAACGAAATGGTGATTGTCAAGGACATTGACGTCTACTCCCTGTGCGA 556040
Query 2133605 GCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGAT 2133664
|||||||||| |||||||||| |||||| ||| | |||||| | ||| | |
Sbjct 556041 GCACCACCTGGTGCCCTTTATGGGCAAGATGCACATTGGCTACATCCCCAACAACGCCGT 556100
Query 2133665 CATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTT 2133704
|| || | |||||| | |||||||||| ||| ||||||
Sbjct 556101 GATTGGCATCAGCAAGCTGCCGCGCATCGCCGAGATGTTT 556140
>seq6
Length=3085841
Score = 87.8 bits (96), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129
|| ||||||||||| |||| || |||||| ||| || |||||||||| ||||||||||
Sbjct 3011310 CGAGAGATCCAGACATCCGTCCGACTGATCCTGCCGGGTGAACTGGCCAAGCACGCCGTC 3011369
Query 725130 TCCGAGGGCACCA 725142
|||||||||||||
Sbjct 3011370 TCCGAGGGCACCA 3011382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808981607726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |