Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 >seq1 Length=7294945 Score = 141 bits (156), Expect = 1e-28 Identities = 565/882 (64%), Gaps = 18/882 (2%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| || | ||| || ||||| ||| ||||| ||||||||||| ||||| Sbjct 1233442 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAA 1233383 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || ||||||| ||| |||| | || | || || | ||| | | ||| || Sbjct 1233382 GGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGAT 1233323 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525 |||||| || ||| ||| || || || || | || | |||| |||||||| Sbjct 1233322 A---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCC--TCGAATTCT 1233268 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || | ||| | | ||||| ||||| || || |||||||| | ||| | Sbjct 1233267 TCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAG 1233208 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | || ||| || ||||| || ||||| || ||||| ||||| | || || || | | Sbjct 1233207 TTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGG 1233148 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | | ||||| || || || || || || || ||||| | | ||| | Sbjct 1233147 GCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCG 1233088 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 ||||| || || || || || || | | | || || || || || || ||||| || | | Sbjct 1233087 TGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACG 1233028 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 |||||||||||||| || |||||| ||||| || || ||||| || || |||| || Sbjct 1233027 TATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTG 1232968 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 || || | ||| ||| || | || || ||| | || || || || || Sbjct 1232967 GTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCA 1232908 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 ||||| || || || | ||||| || | ||||| || |||||||| ||||| || Sbjct 1232907 GCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCG 1232848 Query 69946 TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAAT 70005 || |||||| | || || || |||| ||| ||| || || || || || Sbjct 1232847 TCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAG 1232788 Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA----T 70061 | || ||||| || || || || |||| || | || | |||||| |||| Sbjct 1232787 AGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACA 1232728 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| | | | | || | | || || | || |||||||| | ||| ||||| || Sbjct 1232727 CGCTCAATGT-TGTCTCCC---CAAACGCCAACAGCCACACGCATAATCATGTGCTGTGG 1232672 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 ||| || || | || || | |||| || ||||| ||||| || || || || Sbjct 1232671 TCGCTCAACAATCTTGCCATCAAGCTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCC 1232612 Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223 || || | ||| ||||||| ||||| | ||| |||| Sbjct 1232611 GAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGCAGA 1232570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908602513720