Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 141 1e-28
>seq1
Length=7294945
Score = 141 bits (156), Expect = 1e-28
Identities = 565/882 (64%), Gaps = 18/882 (2%)
Strand=Plus/Minus
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
||| || ||||| || | ||| || ||||| ||| ||||| ||||||||||| |||||
Sbjct 1233442 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAA 1233383
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470
|| ||||||| ||| |||| | || | || || | ||| | | ||| ||
Sbjct 1233382 GGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGAT 1233323
Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525
|||||| || ||| ||| || || || || | || | |||| ||||||||
Sbjct 1233322 A---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCC--TCGAATTCT 1233268
Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585
|| || | ||| | | ||||| ||||| || || |||||||| | ||| |
Sbjct 1233267 TCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAG 1233208
Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645
| | || ||| || ||||| || ||||| || ||||| ||||| | || || || | |
Sbjct 1233207 TTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGG 1233148
Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705
| | ||||| || || || || || || || ||||| | | ||| |
Sbjct 1233147 GCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCG 1233088
Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765
||||| || || || || || || | | | || || || || || || ||||| || | |
Sbjct 1233087 TGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACG 1233028
Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825
|||||||||||||| || |||||| ||||| || || ||||| || || |||| ||
Sbjct 1233027 TATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTG 1232968
Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885
|| || | ||| ||| || | || || ||| | || || || || ||
Sbjct 1232967 GTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCA 1232908
Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945
||||| || || || | ||||| || | ||||| || |||||||| ||||| ||
Sbjct 1232907 GCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCG 1232848
Query 69946 TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAAT 70005
|| |||||| | || || || |||| ||| ||| || || || || ||
Sbjct 1232847 TCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAG 1232788
Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA----T 70061
| || ||||| || || || || |||| || | || | |||||| ||||
Sbjct 1232787 AGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACA 1232728
Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121
||| | | | | || | | || || | || |||||||| | ||| ||||| ||
Sbjct 1232727 CGCTCAATGT-TGTCTCCC---CAAACGCCAACAGCCACACGCATAATCATGTGCTGTGG 1232672
Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181
||| || || | || || | |||| || ||||| ||||| || || || ||
Sbjct 1232671 TCGCTCAACAATCTTGCCATCAAGCTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCC 1232612
Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223
|| || | ||| ||||||| ||||| | ||| ||||
Sbjct 1232611 GAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGCAGA 1232570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908602513720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |