Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 250 3e-61 seq7 104 3e-17 >seq1 Length=7294945 Score = 250 bits (276), Expect = 3e-61 Identities = 1025/1582 (65%), Gaps = 43/1582 (3%) Strand=Plus/Minus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 || |||||||| || || || |||||| || | || || | | || |||||| Sbjct 1234233 ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGG 1234174 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| | | | ||| | | ||||||| | | ||||||||| ||| | | Sbjct 1234173 ATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCG 1234114 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 || || |||| || |||||||| ||||| || || ||| | || | Sbjct 1234113 ACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGC 1234054 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||||||||| | ||||| || || ||||||||||| || |||| ||| || | ||| Sbjct 1234053 TGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTG 1233994 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||| || ||||| || || | | | |||||| |||| ||| | |||||| || | Sbjct 1233993 CTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGC 1233934 Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 |||||||| ||||| | | || | || | || || | | ||||||| |||||||| Sbjct 1233933 TCCTTGAGCGAGTCCCACTCCCACAGGTCAG-TGGGCTTGA-CATCCCACAAGTCAAACT 1233876 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCAT-AGGAACCTTGGGCTTCA 110941 | || | |||| || ||||| || |||| || | |||| |||| ||| | ||| Sbjct 1233875 GGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTT-- 1233818 Query 110942 GCCAA--TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 | ||| | || || | ||||| |||| ||||| || ||||| |||||||| | | Sbjct 1233817 GGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGT 1233759 Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCG 111058 ||| ||| ||||| ||| || || | | || ||| | | || | || || Sbjct 1233758 TCAACTCGCGAGCTTCGGGTGATTCGAAAG-GAAGACGCAGAGCGAGGAAAGCGTCAGCA 1233700 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| |||||||| | |||||| |||| ||| || | ||| || || || || | Sbjct 1233699 AGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGA 1233640 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 ||||| || | || || |||| ||||| || || | ||| | ||| || | Sbjct 1233639 ACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACA 1233580 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTC-TCTTCA---TTGACATACTTTGGAAG 111234 || ||||| || | | | ||| | || || | || | | | |||| | || || Sbjct 1233579 TCGTGAAGCTTCTTAAAGTCATA---GC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAG 1233524 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || | || ||||| ||||| ||||| ||| || | | |||||| | || || Sbjct 1233523 AGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTC 1233464 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || | |||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 1233463 AGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 1233404 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 ||||||||||| ||||| |||| | || ||||| ||||| | | || || | | Sbjct 1233403 GGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTA 1233344 Query 111415 CCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTG 111472 ||| | | || | ||| | | | | | | ||| | |||||| ||||||||| Sbjct 1233343 CCACAGCTTCTG-AGCTCGGATAGTCTTG-CGACCCTTGCCCTCCTTCTCGTACTTCTCA 1233286 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGAC 111530 || || || || || || || ||| || ||| | || || || || || || || | Sbjct 1233285 TACAGAGCCTCGAATTCTTC-GCCATAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGC 1233228 Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | | | || ||| | ||| ||| |||||| ||||||||||| || || || ||||| Sbjct 1233227 ACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCA 1233170 Query 111589 CAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 || | || || || | ||| || ||||||| | || ||||| || | | Sbjct 1233169 GAGAGCGAGGAACAGGTCACGGGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGT 1233111 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----C 111703 |||||||||| | || ||| |||||||| ||||| || |||| || | | || | Sbjct 1233110 CAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGC 1233051 Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 | | | ||| | || | || || | || ||| ||| || || |||||||| || Sbjct 1233050 GCTTGTTG-CCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGG 1232992 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 || ||||| | || ||| || || || ||| ||| | || | | | Sbjct 1232991 ATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGG 1232932 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 |||| || || || ||||| |||||| ||| || || ||||| | | ||||| Sbjct 1232931 TGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTG 1232872 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | |||||||| | || ||| ||||| || | | |||||||| ||||| ||| Sbjct 1232871 TCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA 1232812 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGG 112001 | | ||| |||||||| ||||||||||| || | || || | || | | || || Sbjct 1232811 GCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCT--GG 1232754 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || ||||||||| | |||| ||||||| || || | ||| | || | Sbjct 1232753 ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCA 1232694 Query 112062 CCCGCATGAACATGTACTGTGG 112083 | ||||| | ||||| |||||| Sbjct 1232693 CACGCATAATCATGTGCTGTGG 1232672 >seq7 Length=2824016 Score = 104 bits (114), Expect = 3e-17 Identities = 343/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || || || || || || |||||| || || Sbjct 1203126 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 1203067 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 1203066 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 1203007 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837 ||||| || ||||| |||| |||||| | || ||||| ||| | ||| | | | Sbjct 1203006 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGAT 1202948 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || || ||||| | |||||||| || || || | || | ||||| | || Sbjct 1202947 CCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAA 1202888 Query 122898 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956 | | | | | | | | ||||| | ||| |||| || | || || || | Sbjct 1202887 GAGGTAGTTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCT 1202829 Query 122957 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 || || | | | ||| ||| | || | ||||||| | || || ||| ||| Sbjct 1202828 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 1202770 Query 123016 TGAACCTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 |||||||| |||| ||| | | ||||| ||||| || ||||| |||| Sbjct 1202769 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 1202711 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 123131 |||||| |||| ||||| ||||| | ||| || | || |||| || | ||||| Sbjct 1202710 AAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 1202651 Query 123132 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 1202650 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 1202609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031819440800