Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1 250 3e-61
seq7 104 3e-17
>seq1
Length=7294945
Score = 250 bits (276), Expect = 3e-61
Identities = 1025/1582 (65%), Gaps = 43/1582 (3%)
Strand=Plus/Minus
Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584
|| |||||||| || || || |||||| || | || || | | || ||||||
Sbjct 1234233 ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGG 1234174
Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644
|| ||||| | | | ||| | | ||||||| | | ||||||||| ||| | |
Sbjct 1234173 ATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCG 1234114
Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704
|| || |||| || |||||||| ||||| || || ||| | || |
Sbjct 1234113 ACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGC 1234054
Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764
|||||||||| | ||||| || || ||||||||||| || |||| ||| || | |||
Sbjct 1234053 TGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTG 1233994
Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824
||| || ||||| || || | | | |||||| |||| ||| | |||||| || |
Sbjct 1233993 CTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGC 1233934
Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882
|||||||| ||||| | | || | || | || || | | ||||||| ||||||||
Sbjct 1233933 TCCTTGAGCGAGTCCCACTCCCACAGGTCAG-TGGGCTTGA-CATCCCACAAGTCAAACT 1233876
Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCAT-AGGAACCTTGGGCTTCA 110941
| || | |||| || ||||| || |||| || | |||| |||| ||| | |||
Sbjct 1233875 GGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTT-- 1233818
Query 110942 GCCAA--TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999
| ||| | || || | ||||| |||| ||||| || ||||| |||||||| | |
Sbjct 1233817 GGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGT 1233759
Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCG 111058
||| ||| ||||| ||| || || | | || ||| | | || | || ||
Sbjct 1233758 TCAACTCGCGAGCTTCGGGTGATTCGAAAG-GAAGACGCAGAGCGAGGAAAGCGTCAGCA 1233700
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118
||||| |||||||| | |||||| |||| ||| || | ||| || || || || |
Sbjct 1233699 AGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGA 1233640
Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178
||||| || | || || |||| ||||| || || | ||| | ||| || |
Sbjct 1233639 ACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACA 1233580
Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTC-TCTTCA---TTGACATACTTTGGAAG 111234
|| ||||| || | | | ||| | || || | || | | | |||| | || ||
Sbjct 1233579 TCGTGAAGCTTCTTAAAGTCATA---GC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAG 1233524
Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294
|| | || ||||| ||||| ||||| ||| || | | |||||| | || ||
Sbjct 1233523 AGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTC 1233464
Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354
|| || | |||||| || || || |||| ||||| ||||| ||||| ||||||
Sbjct 1233463 AGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 1233404
Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414
||||||||||| ||||| |||| | || ||||| ||||| | | || || | |
Sbjct 1233403 GGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTA 1233344
Query 111415 CCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTG 111472
||| | | || | ||| | | | | | | ||| | |||||| |||||||||
Sbjct 1233343 CCACAGCTTCTG-AGCTCGGATAGTCTTG-CGACCCTTGCCCTCCTTCTCGTACTTCTCA 1233286
Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGAC 111530
|| || || || || || || ||| || ||| | || || || || || || || |
Sbjct 1233285 TACAGAGCCTCGAATTCTTC-GCCATAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGC 1233228
Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588
| | | || ||| | ||| ||| |||||| ||||||||||| || || || |||||
Sbjct 1233227 ACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCA 1233170
Query 111589 CAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647
|| | || || || | ||| || ||||||| | || ||||| || | |
Sbjct 1233169 GAGAGCGAGGAACAGGTCACGGGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGT 1233111
Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----C 111703
|||||||||| | || ||| |||||||| ||||| || |||| || | | || |
Sbjct 1233110 CAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGC 1233051
Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763
| | | ||| | || | || || | || ||| ||| || || |||||||| ||
Sbjct 1233050 GCTTGTTG-CCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGG 1232992
Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823
|| ||||| | || ||| || || || ||| ||| | || | | |
Sbjct 1232991 ATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGG 1232932
Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883
|||| || || || ||||| |||||| ||| || || ||||| | | |||||
Sbjct 1232931 TGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTG 1232872
Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943
| |||||||| | || ||| ||||| || | | |||||||| ||||| |||
Sbjct 1232871 TCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA 1232812
Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGG 112001
| | ||| |||||||| ||||||||||| || | || || | || | | || ||
Sbjct 1232811 GCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCT--GG 1232754
Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061
|||| || ||||||||| | |||| ||||||| || || | ||| | || |
Sbjct 1232753 ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCA 1232694
Query 112062 CCCGCATGAACATGTACTGTGG 112083
| ||||| | ||||| ||||||
Sbjct 1232693 CACGCATAATCATGTGCTGTGG 1232672
>seq7
Length=2824016
Score = 104 bits (114), Expect = 3e-17
Identities = 343/522 (66%), Gaps = 11/522 (2%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| |||||||| || || || || || || || |||||| || ||
Sbjct 1203126 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 1203067
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||||||||| | |||||| | ||| | || | | || | ||| ||||||||||
Sbjct 1203066 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 1203007
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837
||||| || ||||| |||| |||||| | || ||||| ||| | ||| | | |
Sbjct 1203006 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGAT 1202948
Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897
||| || || ||||| | |||||||| || || || | || | ||||| | ||
Sbjct 1202947 CCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAA 1202888
Query 122898 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956
| | | | | | | | ||||| | ||| |||| || | || || || |
Sbjct 1202887 GAGGTAGTTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCT 1202829
Query 122957 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015
|| || | | | ||| ||| | || | ||||||| | || || ||| |||
Sbjct 1202828 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 1202770
Query 123016 TGAACCTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074
|||||||| |||| ||| | | ||||| ||||| || ||||| ||||
Sbjct 1202769 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 1202711
Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 123131
|||||| |||| ||||| ||||| | ||| || | || |||| || | |||||
Sbjct 1202710 AAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 1202651
Query 123132 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
||||| ||||| ||||||| ||||| ||||| || |||||
Sbjct 1202650 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 1202609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031819440800
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