Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq7 134 2e-26 >seq1 Length=7294945 Score = 233 bits (258), Expect = 2e-56 Identities = 1165/1831 (64%), Gaps = 41/1831 (2%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| || ||| ||| |||| | || ||||||||||| || |||||||| | Sbjct 1234427 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1234368 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | |||| | || ||| | |||| Sbjct 1234367 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 1234308 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| ||||| ||||| ||||| || || || || | ||| | | | Sbjct 1234307 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 1234248 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | | ||| ||||| |||||| |||| ||| ||| || || | || || | Sbjct 1234247 TGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 1234188 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 || || ||||| || || | | | ||| | | ||||||| | | |||| Sbjct 1234187 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 1234128 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCAC 118161 |||| ||| | | ||||||| |||| || |||||||| ||||| | Sbjct 1234127 AGAGGCCAGTATCGACAAGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAACTCGC 1234071 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || ||| |||| | | ||||| |||| ||||| ||||| ||||| |||||||| | Sbjct 1234070 CAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGC 1234011 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||| ||| |||| ||| ||| ||||||||||| || | ||| | ||||| || | || Sbjct 1234010 CCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATAC 1233951 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCC 118339 | | ||| |||| | |||||||| | |||||| | | || | || | | || | Sbjct 1233950 CGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAG--TGGGCTTGAC 1233893 Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 | ||||| ||||||||||| || |||| || || || ||||||| |||| |||||| Sbjct 1233892 ATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATA 1233833 Query 118400 TGGGCCCTCAACCTCCGCCA-ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 || ||||| | || || | | | || | ||||||||||| ||||| || || || | Sbjct 1233832 AGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCT 1233774 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AA 118517 |||| || | |||| | || ||| || || || | || | ||| | Sbjct 1233773 CAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAAGGAAGAC-GCAGAGCG 1233715 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || | || || ||||| || ||||| | ||||| || || || | | ||| Sbjct 1233714 AGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTG 1233655 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || ||||| || | ||| |||||| | | || || || | Sbjct 1233654 TTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACA 1233595 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697 || ||||| || | || |||||||| | | ||| | | || | | | |||| Sbjct 1233594 ACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACA 1233535 Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757 | ||| || || | || |||| || || |||| | ||| || ||| |||| Sbjct 1233534 AAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTAC 1233475 Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || | || || ||||| | ||| || || ||||| |||| |||||| || || | Sbjct 1233474 TCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTC 1233415 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || ||| || ||||||||||||||||| | || | || ||||| || |||| || Sbjct 1233414 TTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCT 1233355 Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAG--TGGCGTTGGCTCGCCCCTCTTCC 118934 || || | | ||| | | || | |||| | | || | ||| || | ||||| | | Sbjct 1233354 AGGATGGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCG-ACCCTTG-CCCTCCTTC 1233298 Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 118994 |||||||| || || || || || ||||| || | || | || || || || Sbjct 1233297 TCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGG-GCA 1233239 Query 118995 TT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAGAGG 119051 || | ||||| | | || ||| | ||| || |||||| ||||||||||| || Sbjct 1233238 TTCGTTGGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGA 1233181 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 || ||||||||||| || ||| || || || || | ||||| | || || || Sbjct 1233180 TCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTC 1233121 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 || | || | || || | || ||| |||||||| || || ||||| | || | Sbjct 1233120 TTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAG 1233061 Query 119172 GACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225 | || | | || ||| |||||| || || || |||||| ||| || || Sbjct 1233060 GCACC---AGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACT 1233004 Query 119226 CGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 119285 |||||||| || |||||||| | ||| || || || || ||| ||| | Sbjct 1233003 CGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTA 1232944 Query 119286 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 119345 || | || | ||||| || || || ||||| || ||| ||| || || || || Sbjct 1232943 GCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACAT 1232884 Query 119346 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 119405 | | ||| || ||||||| || || || ||| |||| | | | |||||||| Sbjct 1232883 GTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCAT 1232824 Query 119406 CTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| ||| || || || ||||||||||||||||| || || | || ||| | || Sbjct 1232823 GAGGACAGCTGA-GCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAA 1232765 Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522 | | || |||||| || ||| ||||| | ||| ||||| || || | Sbjct 1232764 GAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAA 1232707 Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 119582 | || | | || ||||||| ||||| || ||| || | | | ||||| ||| Sbjct 1232706 ACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGC 1232647 Query 119583 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 || |||| || | ||||| ||||||| Sbjct 1232646 TTCAGGAGATATGACCGCTCCAGTGTCTTGA 1232616 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 179089 CCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCC 179148 ||||| | ||| | ||||| |||| |||||||||||||| |||| |||| | |||| Sbjct 4043661 CCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGGGCC 4043602 Query 179149 AACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCC-GC 179207 || |||||||| | | || |||| || ||||| |||||||| | | |||| | Sbjct 4043601 AATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC-AGTCCAGA 4043543 Query 179208 CACATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCA 179264 || || | |||| || | | || | | ||||||||| | ||| | | ||| || Sbjct 4043542 GACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTCTCTTGAAACA 4043486 Query 179265 CGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGA 179321 || |||| |||||||| ||| |||||| || || || ||| || |||||| Sbjct 4043485 GGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGGGATGGA 4043429 >seq7 Length=2824016 Score = 134 bits (148), Expect = 2e-26 Identities = 526/813 (65%), Gaps = 17/813 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| ||| ||| | ||| |||||||| Sbjct 1203414 TACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 1203355 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| || || |||| | || | |||| ||| ||||| Sbjct 1203354 AAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTG-CCAAGAGCGACGAGCAGACG 1203296 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | || |||||||||||| |||| || |||||| || | || ||| Sbjct 1203295 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACA 1203236 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | ||| | | ||| || || || || | ||| | | Sbjct 1203235 GGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACG 1203176 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||||| ||| | | || || || | || || || | |||| || Sbjct 1203175 GATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGG--CAAG-CAAAGTC 1203119 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || |||||| ||| || |||||||| Sbjct 1203118 GGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAG 1203059 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| | |||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 1203058 ACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGAC 1202999 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202 || || |||| || |||| ||||||||| | | | |||| | | |||||| | Sbjct 1202998 GGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGATCCACTTGA 1202940 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262 | ||||| | ||||| || ||| || || | ||||| || || | ||||| | | Sbjct 1202939 TGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGT 1202880 Query 130263 TCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321 | | | || | || |||| ||| | || ||||| || || || ||| ||| Sbjct 1202879 TGCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 1202821 Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380 | | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 1202820 ATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 1202762 Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | ||| | | ||||| ||||| || ||||| ||||||| || || Sbjct 1202761 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAAGC 1202702 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497 || ||| | ||||| | || || | ||||||| || | |||||||||| || Sbjct 1202701 CAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 1202642 Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| || ||||| | ||| || || ||||| Sbjct 1202641 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 1202609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435022199880