Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1 233 2e-56
seq7 134 2e-26
>seq1
Length=7294945
Score = 233 bits (258), Expect = 2e-56
Identities = 1165/1831 (64%), Gaps = 41/1831 (2%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| || ||| ||| |||| | || ||||||||||| || |||||||| |
Sbjct 1234427 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1234368
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||||| || | ||||| || | |||| | || ||| | ||||
Sbjct 1234367 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 1234308
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| ||||| ||||| ||||| ||||| || || || || | ||| | | |
Sbjct 1234307 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 1234248
Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044
| | ||| ||||| |||||| |||| ||| ||| || || | || || |
Sbjct 1234247 TGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 1234188
Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104
|| || ||||| || || | | | ||| | | ||||||| | | ||||
Sbjct 1234187 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 1234128
Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCAC 118161
|||| ||| | | ||||||| |||| || |||||||| ||||| |
Sbjct 1234127 AGAGGCCAGTATCGACAAGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAACTCGC 1234071
Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221
| || ||| |||| | | ||||| |||| ||||| ||||| ||||| |||||||| |
Sbjct 1234070 CAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGC 1234011
Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281
||| ||| |||| ||| ||| ||||||||||| || | ||| | ||||| || | ||
Sbjct 1234010 CCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATAC 1233951
Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCC 118339
| | ||| |||| | |||||||| | |||||| | | || | || | | || |
Sbjct 1233950 CGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAG--TGGGCTTGAC 1233893
Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399
| ||||| ||||||||||| || |||| || || || ||||||| |||| ||||||
Sbjct 1233892 ATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATA 1233833
Query 118400 TGGGCCCTCAACCTCCGCCA-ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458
|| ||||| | || || | | | || | ||||||||||| ||||| || || || |
Sbjct 1233832 AGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCT 1233774
Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AA 118517
|||| || | |||| | || ||| || || || | || | ||| |
Sbjct 1233773 CAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAAGGAAGAC-GCAGAGCG 1233715
Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577
| || | || || ||||| || ||||| | ||||| || || || | | |||
Sbjct 1233714 AGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTG 1233655
Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637
|| ||||| || ||||| || | ||| |||||| | | || || || |
Sbjct 1233654 TTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACA 1233595
Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697
|| ||||| || | || |||||||| | | ||| | | || | | | ||||
Sbjct 1233594 ACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACA 1233535
Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757
| ||| || || | || |||| || || |||| | ||| || ||| ||||
Sbjct 1233534 AAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTAC 1233475
Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817
|| | || || ||||| | ||| || || ||||| |||| |||||| || || |
Sbjct 1233474 TCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTC 1233415
Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877
|| ||| || ||||||||||||||||| | || | || ||||| || |||| ||
Sbjct 1233414 TTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCT 1233355
Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAG--TGGCGTTGGCTCGCCCCTCTTCC 118934
|| || | | ||| | | || | |||| | | || | ||| || | ||||| | |
Sbjct 1233354 AGGATGGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCG-ACCCTTG-CCCTCCTTC 1233298
Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 118994
|||||||| || || || || || ||||| || | || | || || || ||
Sbjct 1233297 TCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGG-GCA 1233239
Query 118995 TT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAGAGG 119051
|| | ||||| | | || ||| | ||| || |||||| ||||||||||| ||
Sbjct 1233238 TTCGTTGGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGA 1233181
Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111
|| ||||||||||| || ||| || || || || | ||||| | || || ||
Sbjct 1233180 TCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTC 1233121
Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171
|| | || | || || | || ||| |||||||| || || ||||| | || |
Sbjct 1233120 TTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAG 1233061
Query 119172 GACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225
| || | | || ||| |||||| || || || |||||| ||| || ||
Sbjct 1233060 GCACC---AGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACT 1233004
Query 119226 CGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 119285
|||||||| || |||||||| | ||| || || || || ||| ||| |
Sbjct 1233003 CGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTA 1232944
Query 119286 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 119345
|| | || | ||||| || || || ||||| || ||| ||| || || || ||
Sbjct 1232943 GCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACAT 1232884
Query 119346 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 119405
| | ||| || ||||||| || || || ||| |||| | | | ||||||||
Sbjct 1232883 GTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCAT 1232824
Query 119406 CTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464
|||| ||| || || || ||||||||||||||||| || || | || ||| | ||
Sbjct 1232823 GAGGACAGCTGA-GCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAA 1232765
Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522
| | || |||||| || ||| ||||| | ||| ||||| || || |
Sbjct 1232764 GAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAA 1232707
Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 119582
| || | | || ||||||| ||||| || ||| || | | | ||||| |||
Sbjct 1232706 ACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGC 1232647
Query 119583 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
|| |||| || | ||||| |||||||
Sbjct 1232646 TTCAGGAGATATGACCGCTCCAGTGTCTTGA 1232616
Score = 84.2 bits (92), Expect = 3e-11
Identities = 163/237 (69%), Gaps = 8/237 (3%)
Strand=Plus/Minus
Query 179089 CCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCC 179148
||||| | ||| | ||||| |||| |||||||||||||| |||| |||| | ||||
Sbjct 4043661 CCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGGGCC 4043602
Query 179149 AACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCC-GC 179207
|| |||||||| | | || |||| || ||||| |||||||| | | |||| |
Sbjct 4043601 AATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC-AGTCCAGA 4043543
Query 179208 CACATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCA 179264
|| || | |||| || | | || | | ||||||||| | ||| | | ||| ||
Sbjct 4043542 GACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTCTCTTGAAACA 4043486
Query 179265 CGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGA 179321
|| |||| |||||||| ||| |||||| || || || ||| || ||||||
Sbjct 4043485 GGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGGGATGGA 4043429
>seq7
Length=2824016
Score = 134 bits (148), Expect = 2e-26
Identities = 526/813 (65%), Gaps = 17/813 (2%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || || ||||||||||||||||| ||||| ||| ||| | ||| ||||||||
Sbjct 1203414 TACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 1203355
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| ||||| ||||| || || |||| | || | |||| ||| |||||
Sbjct 1203354 AAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTG-CCAAGAGCGACGAGCAGACG 1203296
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||| | || |||||||||||| |||| || |||||| || | || |||
Sbjct 1203295 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACA 1203236
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||||| || || | ||| | | ||| || || || || | ||| | |
Sbjct 1203235 GGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACG 1203176
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| ||||| ||| | | || || || | || || || | |||| ||
Sbjct 1203175 GATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGG--CAAG-CAAAGTC 1203119
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||||||||| |||||||| || || |||||| ||| || ||||||||
Sbjct 1203118 GGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAG 1203059
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| | |||||| | |||||| || | ||| | || ||||||||| ||||| ||
Sbjct 1203058 ACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGAC 1202999
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202
|| || |||| || |||| ||||||||| | | | |||| | | |||||| |
Sbjct 1202998 GGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGATCCACTTGA 1202940
Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262
| ||||| | ||||| || ||| || || | ||||| || || | ||||| | |
Sbjct 1202939 TGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGT 1202880
Query 130263 TCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321
| | | || | || |||| ||| | || ||||| || || || ||| |||
Sbjct 1202879 TGCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 1202821
Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380
| | | ||| || | ||| | ||||||| | || || ||| ||||| |||||
Sbjct 1202820 ATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 1202762
Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440
| ||| | | ||||| ||||| || ||||| ||||||| || ||
Sbjct 1202761 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAAGC 1202702
Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497
|| ||| | ||||| | || || | ||||||| || | |||||||||| ||
Sbjct 1202701 CAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 1202642
Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|||||| || ||||| | ||| || || |||||
Sbjct 1202641 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 1202609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618435022199880
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