Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1 302 5e-77
seq7 143 3e-29
seq4 120 4e-22
>seq1
Length=7294945
Score = 302 bits (334), Expect = 5e-77
Identities = 980/1497 (65%), Gaps = 35/1497 (2%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| ||||| | ||||| ||||| | || || || || ||||||| ||||
Sbjct 1232672 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1232731
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 104339
| ||||||||| || |||||| || | | || | || || | || |||||||
Sbjct 1232732 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCCTCTCCCACCCTCT 1232789
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| |||||||| ||| | | || ||||| |||||||| | | || ||||| |
Sbjct 1232790 TCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 1232849
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|| || | |||||||| | ||||| | | ||||| || || ||| |||||
Sbjct 1232850 ACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTG 1232909
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| ||||| || || || |||| | | | || | ||| ||| || || |
Sbjct 1232910 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCA 1232969
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| ||| || | ||||| || || |||||||| || || ||| ||| || | || |
Sbjct 1232970 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 1233029
Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635
| | || | ||| | | | | || | | || |||| || ||||| ||||||
Sbjct 1233030 TCGACCAGGGTGG-CAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCAC 1233088
Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695
|| ||| || | ||||||||||| | || ||||| || | || |||| || |
Sbjct 1233089 GCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCC 1233148
Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA-- 104753
|| || || ||| |||||||||||| || ||||| ||||||||| | |||||| |||
Sbjct 1233149 CGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAAC 1233208
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811
||| | ||| || | | || || || || || ||||| || | || ||| | ||
Sbjct 1233209 TTGG--ACTGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTAT-GG 1233264
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869
|| || || || || || || |||||||| |||| ||| | | | | || |||
Sbjct 1233265 CGAAGAATTCGAGGCTCTGTATGAGAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACT 1233322
Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| | |||| | || | ||||| | | || || || | || || |||||||||| ||
Sbjct 1233323 ATCCGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAACCC 1233381
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| ||||||||||| || ||||| |||| ||||| || || ||||| |||| ||
Sbjct 1233382 CTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCAT 1233441
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| || ||||| ||||| || || ||| | || | | | | || ||| |||||
Sbjct 1233442 CCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCTGT 1233501
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTT 105106
|| ||| | || || | |||||||| | ||| || | | | || ||| | | |
Sbjct 1233502 CTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGA-CTATA-ACGAAGGCTGCTAT 1233559
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|| | | | || || ||||| ||||| || || | ||||| ||| | | ||
Sbjct 1233560 GACTTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATC 1233619
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || | ||||||||| || ||||| || ||| | | ||||| || |||
Sbjct 1233620 GATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACCCATT 1233679
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTC 105285
||| | |||||||||||||| || || | ||| | || || || | | || || ||
Sbjct 1233680 GGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCTTTCGAATC 1233738
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
|||||| || | || || || ||||||||||| || ||||| || || ||
Sbjct 1233739 ACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCCTCGA 1233798
Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405
||| | ||| | || || | || ||||| ||||| | || |||| || || ||
Sbjct 1233799 GGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGATCACCCGC 1233858
Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTG 105465
|| |||| | || || ||||| ||||||| | || ||| | | || ||
Sbjct 1233859 CTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCAAGCCCACTGACCTGTGGGAGTG 1233918
Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525
||| | |||||||| | || |||||| | ||| |||| |||||| | ||| | || ||
Sbjct 1233919 GGACTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCC 1233978
Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585
||||| || ||| ||| | || ||| |||| || ||||||||||| || ||||||||
Sbjct 1233979 CATGCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAGCCCTACAC 1234038
Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCA 105642
| |||||||| | | || | ||| || || ||||| | ||||||| | ||
Sbjct 1234039 CTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCT 1234098
Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699
|||| |||| || || | ||| ||||||||| | | ||||||| | | |||
Sbjct 1234099 TCTCAAGGAT---CTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCAT 1234152
Score = 91.5 bits (100), Expect = 2e-13
Identities = 199/296 (67%), Gaps = 8/296 (3%)
Strand=Plus/Minus
Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532
|| || | |||||| | ||| | ||||| || | |||||||||||||| |||| ||
Sbjct 4043670 AGTCGAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 4043611
Query 168533 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 168592
|| | ||||| |||||||| | | || |||| || ||||||||||| ||| ||
Sbjct 4043610 TCTTGGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC 4043551
Query 168593 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 168648
| | ||| | | |||| || | | |||| | |||||||||| | ||| |
Sbjct 4043550 AGTCCAGAGACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTC-T 4043495
Query 168649 GTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 168708
| ||| || ||||||| ||||| ||||| |||||| || ||||| ||| |
Sbjct 4043494 CTTGAAACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGG 4043435
Query 168709 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 168764
||| || | | ||||||| |||||| | ||| ||||||| |||||||
Sbjct 4043434 GATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 4043379
>seq7
Length=2824016
Score = 143 bits (158), Expect = 3e-29
Identities = 352/523 (67%), Gaps = 13/523 (2%)
Strand=Plus/Plus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497
||||| || |||||| | ||||| || |||||| || |||| ||||| | | | ||
Sbjct 1202609 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 1202668
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
|| | || ||| | ||||| ||||| |||| |||||||||| ||||| || |||
Sbjct 1202669 GATGACGAGAAGTACTTCATCTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATT 1202728
Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616
|| ||||| | | || | ||||| || |||| | || || |||
Sbjct 1202729 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 1202787
Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675
|||||| | | ||| |||| ||| | | | || ||||| ||| ||||
Sbjct 1202788 CTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 1202846
Query 94676 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 94733
| |||| || | ||||| | | | || || | ||||| | ||||| | ||
Sbjct 1202847 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGAC 1202904
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792
|||| || || | ||||| || || ||||| || |||||| | | |||| | | |
Sbjct 1202905 CATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTC 1202964
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
|||||||||| |||| || | || ||||| || ||||||||||||||| ||
Sbjct 1202965 -TTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAG 1203023
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
|||| | | || | |||||||||||| ||||||||||||| || || ||||||||
Sbjct 1203024 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 1203083
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||| ||||||||||||||||| || ||| || |||||
Sbjct 1203084 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGC 1203126
>seq4
Length=4000284
Score = 120 bits (132), Expect = 4e-22
Identities = 281/415 (68%), Gaps = 22/415 (5%)
Strand=Plus/Plus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || ||||| | ||||| | ||| | || |||| | ||||| || ||||
Sbjct 1906489 TCAAAGCGGCCGGGACGCATCAGCGCCTTATCCAAGACATCAGCACGATTGGTACCGGCC 1906548
Query 9587 ATGACAACAATACCTGTT-TC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644
| |||||| | |||||| || | | | || || ||||| ||||| | || |||||||
Sbjct 1906549 AAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTAAGAATCTGGTTAA 1906606
Query 9645 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCC--C 9700
|| || ||||||||||| ||| | || ||| || || || || || |
Sbjct 1906607 GGGTAGCCTCGCGTTCATCATTTCCGCCGA-AT----CCACGACCGCTTTCCTGTCGAGC 1906661
Query 9701 ACGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753
||||| ||| || || |||||||||| |||||| || || | || | |
Sbjct 1906662 ACGGCCGATGGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTTCTTTCGGCCTTC 1906721
Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
|||| || || ||||| || | ||||| |||||||||||||||||||| | |
Sbjct 1906722 GGCAAACAGGTCTCGTACTCGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCAGA 1906781
Query 9814 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
|| || | | ||| ||||| ||| || || ||| | || |||||||||||
Sbjct 1906782 ACCGCTTACGCT-AAAGAAAGGGACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 1906840
Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|||| || || || || ||| | ||| | ||| ||||| ||||||||||| ||
Sbjct 1906841 TCTTTCCTGTTCCCGGGGGACCAGAGAGAATGGCGCCTCGAGGAATCTTGGCACC 1906895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260632312520
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