Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 302 5e-77 seq7 143 3e-29 seq4 120 4e-22 >seq1 Length=7294945 Score = 302 bits (334), Expect = 5e-77 Identities = 980/1497 (65%), Gaps = 35/1497 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| ||||| | || || || || ||||||| |||| Sbjct 1232672 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1232731 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || |||||| || | | || | || || | || ||||||| Sbjct 1232732 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCCTCTCCCACCCTCT 1232789 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| ||| | | || ||||| |||||||| | | || ||||| | Sbjct 1232790 TCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 1232849 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||| | ||||| | | ||||| || || ||| ||||| Sbjct 1232850 ACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTG 1232909 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | | || | ||| ||| || || | Sbjct 1232910 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCA 1232969 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||||| || || |||||||| || || ||| ||| || | || | Sbjct 1232970 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 1233029 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | ||| | | | | || | | || |||| || ||||| |||||| Sbjct 1233030 TCGACCAGGGTGG-CAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCAC 1233088 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || ||| || | ||||||||||| | || ||||| || | || |||| || | Sbjct 1233089 GCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCC 1233148 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA-- 104753 || || || ||| |||||||||||| || ||||| ||||||||| | |||||| ||| Sbjct 1233149 CGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAAC 1233208 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 ||| | ||| || | | || || || || || ||||| || | || ||| | || Sbjct 1233209 TTGG--ACTGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTAT-GG 1233264 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 || || || || || || || |||||||| |||| ||| | | | | || ||| Sbjct 1233265 CGAAGAATTCGAGGCTCTGTATGAGAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACT 1233322 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | |||| | || | ||||| | | || || || | || || |||||||||| || Sbjct 1233323 ATCCGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAACCC 1233381 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | ||||||||||| || ||||| |||| ||||| || || ||||| |||| || Sbjct 1233382 CTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCAT 1233441 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || ||||| ||||| || || ||| | || | | | | || ||| ||||| Sbjct 1233442 CCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCTGT 1233501 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTT 105106 || ||| | || || | |||||||| | ||| || | | | || ||| | | | Sbjct 1233502 CTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGA-CTATA-ACGAAGGCTGCTAT 1233559 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | | || || ||||| ||||| || || | ||||| ||| | | || Sbjct 1233560 GACTTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATC 1233619 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || | ||||||||| || ||||| || ||| | | ||||| || ||| Sbjct 1233620 GATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACCCATT 1233679 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTC 105285 ||| | |||||||||||||| || || | ||| | || || || | | || || || Sbjct 1233680 GGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCTTTCGAATC 1233738 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 |||||| || | || || || ||||||||||| || ||||| || || || Sbjct 1233739 ACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCCTCGA 1233798 Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 ||| | ||| | || || | || ||||| ||||| | || |||| || || || Sbjct 1233799 GGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGATCACCCGC 1233858 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTG 105465 || |||| | || || ||||| ||||||| | || ||| | | || || Sbjct 1233859 CTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCAAGCCCACTGACCTGTGGGAGTG 1233918 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 ||| | |||||||| | || |||||| | ||| |||| |||||| | ||| | || || Sbjct 1233919 GGACTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCC 1233978 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| || ||| ||| | || ||| |||| || ||||||||||| || |||||||| Sbjct 1233979 CATGCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAGCCCTACAC 1234038 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCA 105642 | |||||||| | | || | ||| || || ||||| | ||||||| | || Sbjct 1234039 CTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCT 1234098 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699 |||| |||| || || | ||| ||||||||| | | ||||||| | | ||| Sbjct 1234099 TCTCAAGGAT---CTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCAT 1234152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 199/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532 || || | |||||| | ||| | ||||| || | |||||||||||||| |||| || Sbjct 4043670 AGTCGAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 4043611 Query 168533 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 168592 || | ||||| |||||||| | | || |||| || ||||||||||| ||| || Sbjct 4043610 TCTTGGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC 4043551 Query 168593 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 168648 | | ||| | | |||| || | | |||| | |||||||||| | ||| | Sbjct 4043550 AGTCCAGAGACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTC-T 4043495 Query 168649 GTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 168708 | ||| || ||||||| ||||| ||||| |||||| || ||||| ||| | Sbjct 4043494 CTTGAAACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGG 4043435 Query 168709 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 168764 ||| || | | ||||||| |||||| | ||| ||||||| ||||||| Sbjct 4043434 GATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 4043379 >seq7 Length=2824016 Score = 143 bits (158), Expect = 3e-29 Identities = 352/523 (67%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 1202609 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 1202668 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| ||||| |||| |||||||||| ||||| || ||| Sbjct 1202669 GATGACGAGAAGTACTTCATCTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATT 1202728 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | || | ||||| || |||| | || || ||| Sbjct 1202729 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 1202787 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 1202788 CTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 1202846 Query 94676 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 94733 | |||| || | ||||| | | | || || | ||||| | ||||| | || Sbjct 1202847 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGAC 1202904 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || || | ||||| || || ||||| || |||||| | | |||| | | | Sbjct 1202905 CATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTC 1202964 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 |||||||||| |||| || | || ||||| || ||||||||||||||| || Sbjct 1202965 -TTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAG 1203023 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| | | || | |||||||||||| ||||||||||||| || || |||||||| Sbjct 1203024 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 1203083 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 1203084 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGC 1203126 >seq4 Length=4000284 Score = 120 bits (132), Expect = 4e-22 Identities = 281/415 (68%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || ||||| | ||||| | ||| | || |||| | ||||| || |||| Sbjct 1906489 TCAAAGCGGCCGGGACGCATCAGCGCCTTATCCAAGACATCAGCACGATTGGTACCGGCC 1906548 Query 9587 ATGACAACAATACCTGTT-TC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | |||||| | |||||| || | | | || || ||||| ||||| | || ||||||| Sbjct 1906549 AAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTAAGAATCTGGTTAA 1906606 Query 9645 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCC--C 9700 || || ||||||||||| ||| | || ||| || || || || || | Sbjct 1906607 GGGTAGCCTCGCGTTCATCATTTCCGCCGA-AT----CCACGACCGCTTTCCTGTCGAGC 1906661 Query 9701 ACGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||||| ||| || || |||||||||| |||||| || || | || | | Sbjct 1906662 ACGGCCGATGGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTTCTTTCGGCCTTC 1906721 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||| || || ||||| || | ||||| |||||||||||||||||||| | | Sbjct 1906722 GGCAAACAGGTCTCGTACTCGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCAGA 1906781 Query 9814 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 || || | | ||| ||||| ||| || || ||| | || ||||||||||| Sbjct 1906782 ACCGCTTACGCT-AAAGAAAGGGACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 1906840 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||| || || || || ||| | ||| | ||| ||||| ||||||||||| || Sbjct 1906841 TCTTTCCTGTTCCCGGGGGACCAGAGAGAATGGCGCCTCGAGGAATCTTGGCACC 1906895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260632312520