Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 291 9e-74 seq6 185 1e-41 >seq1 Length=7294945 Score = 291 bits (322), Expect = 9e-74 Identities = 1128/1751 (64%), Gaps = 51/1751 (3%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||| |||||||| || ||||||||| | |||| Sbjct 1234404 GCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 1234345 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | | ||| | | |||||| | || |||| |||||||| ||||| |||||| Sbjct 1234344 ATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGA 1234285 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 |||||||| ||||| || || | ||| | | || || | | | | || ||||| Sbjct 1234284 TCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGGCGCT-GAGAGATCTCCCA 1234226 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| || | || | ||||||| || | | | | Sbjct 1234225 AACAGTCTTGTACAGGGCCTT--GATG-TCGGCGGGAATGTTGGGAATGTTCTGGATAGA 1234169 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || |||| | || |||| || | ||||| ||| | | || Sbjct 1234168 ACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAG 1234109 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| || | ||| | | ||| || | || |||| || || ||| || ||| | Sbjct 1234108 ATCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCAGCAAGGACACGTCGCTG 1234052 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || || ||||| || |||||||| | ||||| Sbjct 1234051 GTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCT 1233992 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| ||| |||| | || || || | ||||||| ||| || | ||| Sbjct 1233991 GGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTC 1233932 Query 80502 ---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553 | || | || || || | ||| ||| |||| |||||| ||| | Sbjct 1233931 CTTGAGCGAGTCCCACTCCCACAGGTCAGTGG----GCT-TGACATCCCACAAGTCAAAC 1233877 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||||| || || || || || ||| ||| | ||| || || ||||| ||||| Sbjct 1233876 TGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTG 1233817 Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 || | ||| || || ||||| ||||| || ||| |||||||| ||||||| Sbjct 1233816 GCAATCTCCATAGATGCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTC 1233757 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | |||| || | || ||||| | | | || | ||| ||||||| || Sbjct 1233756 AACTCGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGA 1233697 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAAT 80792 |||||||| || | | || || |||||||| |||| | | || | ||||| ||| Sbjct 1233696 CCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG-CCTCCTGAAC 1233638 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| |||| |||||||| |||||| ||||| || ||| ||| |||||||| Sbjct 1233637 GGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATC 1233578 Query 80853 ATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906 ||||| |||| |||||| | || ||| | ||||| || || || || Sbjct 1233577 GTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAA 1233518 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 || |||| ||||| || || ||||| |||| | | |||| ||||| || ||||| Sbjct 1233517 AGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCA 1233458 Query 80967 CAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 | || || ||| || || |||||||| |||||||| |||| |||||| || Sbjct 1233457 GAGGTTGGAG--CTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 1233400 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 |||||||| ||| | ||| |||| ||||| ||| | || ||||||| || ||| Sbjct 1233399 TCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCAC 1233340 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCT 81144 | || | || || |||||| ||||| || | | ||||| | || Sbjct 1233339 AGCTTCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGA 1233280 Query 81145 TCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 | ||||| | | || | | ||| ||| ||| | ||||| ||||| |||||||||| Sbjct 1233279 GCCTCGAATTCTTCGCCATAGCAGT-CAGCAAGGCCAGGGCATTCGTTGGGGCACATCAA 1233221 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 |||||| || ||||| ||| ||||||||| |||||||||||||| ||| Sbjct 1233220 AGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAG 1233161 Query 81264 GAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 ||||||||| ||| || |||| || | || ||||| ||| | || || || || Sbjct 1233160 GAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTC 1233101 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCC 81380 | || || || ||||| ||||| || || | ||| | | || ||| ||| Sbjct 1233100 AAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCC 1233041 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 |||||||| |||||| | |||||| ||| || || || | ||| ||||||||||| | Sbjct 1233040 ACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTT 1232981 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 || |||||| || || | || || ||| | || || | | || || Sbjct 1232980 GGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAG 1232921 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 ||||| ||||| | | ||| |||||| ||||| || | || || || || || Sbjct 1232920 GCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACC 1232861 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 ||| ||||| || | |||||||| | || ||| || |||| |||| |||| | | Sbjct 1232860 CTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA--GCTTGTGGG 1232803 Query 81621 G--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || || ||||| || || || | || || | || | | | ||||| |||| Sbjct 1232802 GTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGG 1232743 Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738 || || || ||| || ||| | ||| || || || | ||| |||||||||| | Sbjct 1232742 TATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATC 1232683 Query 81739 ATGTACTGGGG 81749 |||| ||| || Sbjct 1232682 ATGTGCTGTGG 1232672 Score = 120 bits (132), Expect = 3e-22 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27405 AATGC--AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||||| ||| || || ||||| || || |||||||| || || |||||||| ||||| Sbjct 2968947 AATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCC 2968888 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || || ||||||||||||||||| || || || Sbjct 2968887 TCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGAT 2968828 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || ||||| ||||| |||||||||| || ||||| | ||||| Sbjct 2968827 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTAC 2968768 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 2968767 AACATCCAGAAGG 2968755 Score = 96.9 bits (106), Expect = 4e-15 Identities = 228/330 (69%), Gaps = 12/330 (4%) Strand=Plus/Plus Query 31219 GACGCCAACTGGGCCGGTACCCACAAGTCGC-ACGAGTGCACGCTTATTATTACCGAGGG 31277 || ||||||| ||| || ||| | || || ||||||||||||| || | || || || Sbjct 4042637 GAAGCCAACTTGGCGGGAACC-AGGCGTGGCCACGAGTGCACGCTAATCTTGACTGAAGG 4042695 Query 31278 TGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTG-TTGTGGGGCGCAATGCGT-TC 31335 ||||| || || | || ||| || |||| ||| || | | | | | ||| || Sbjct 4042696 AGACTCTGCCAAAGGTCTGGCTGTTTCTGGAC-GAGCCATTCTTGATCCCGAC-CGTATC 4042753 Query 31336 GGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTT 31395 || ||||| || || || || || | || |||||||| ||||| ||| || | || | Sbjct 4042754 GGCGTGTTCCCACTTCGTGGTAAACTGCTAAACGTTCGAGACGCTTCCATTGACCAAATC 4042813 Query 31396 ACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG-GCA-AGG 31453 || | || ||||| || ||| | || || |||| || || |||| ||| | | Sbjct 4042814 ACCAAAAACCAAGAGATTCAAAACATCAAGCAGTTCCTGGGTCTCAAGCACAAGCAGACG 4042873 Query 31454 TATA-TAATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGAT 31512 || | | || || ||| | ||||| ||||||| ||||||||| ||| |||| ||| Sbjct 4042874 TACACTGAT--ACGAAGA-ACTTGCGTTACGGTCACCTCATGATCATGGCCGATCAGGAT 4042930 Query 31513 CTCGACGGCAGTCACATCAAGGGTCTTGTC 31542 | |||||| ||||| |||||||||||| || Sbjct 4042931 CACGACGGTAGTCATATCAAGGGTCTTCTC 4042960 >seq6 Length=3085841 Score = 185 bits (204), Expect = 1e-41 Identities = 172/216 (80%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || ||||| ||||| |||||| |||| ||||| Sbjct 760655 GTCAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGAC 760596 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| |||||||||||||| || Sbjct 760595 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 760536 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 |||||||||||||| || ||||| | ||| ||||| ||| || || || |||| ||||| Sbjct 760535 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGC-GATTACAACATCCAGAAGGA 760477 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| || ||| | |||||||| ||||| Sbjct 760476 GTCTACCCTTCACCTTGTCCTTCGTCTTCGTGGTGG 760441 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 760947 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 760888 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| | || || |||||||||||||| |||||||| |||||| Sbjct 760887 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 760828 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| |||||||||||||||| || || || | ||||| || Sbjct 760827 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 760768 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 760767 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 760721 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 1398279 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1398338 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 1398339 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1398398 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || |||||||||||||| |||||||||| || ||||| ||| ||||| || Sbjct 1398399 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 1398457 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 1398458 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1398505 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || || || || || |||||| | Sbjct 760439 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 760380 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||||||||||||||| || || || |||||| Sbjct 760379 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 760320 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || ||||||||||| || || || | ||| ||||| ||| ||||| || Sbjct 760319 CAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGC-GACTACAA 760261 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || | ||| | || || || ||||| || Sbjct 760260 CATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGCCTGCGTGGTGGCCA 760210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310236035760