Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1 291 9e-74
seq6 185 1e-41
>seq1
Length=7294945
Score = 291 bits (322), Expect = 9e-74
Identities = 1128/1751 (64%), Gaps = 51/1751 (3%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || ||||| ||||||||||| |||||||| || ||||||||| | ||||
Sbjct 1234404 GCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 1234345
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| | | ||| | | |||||| | || |||| |||||||| ||||| ||||||
Sbjct 1234344 ATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGA 1234285
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210
|||||||| ||||| || || | ||| | | || || | | | | || |||||
Sbjct 1234284 TCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGGCGCT-GAGAGATCTCCCA 1234226
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| || | || | ||||||| || | | | |
Sbjct 1234225 AACAGTCTTGTACAGGGCCTT--GATG-TCGGCGGGAATGTTGGGAATGTTCTGGATAGA 1234169
Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| || |||| | || |||| || | ||||| ||| | | ||
Sbjct 1234168 ACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAG 1234109
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| || | ||| | | ||| || | || |||| || || ||| || ||| |
Sbjct 1234108 ATCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCAGCAAGGACACGTCGCTG 1234052
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || || ||||| || |||||||| | |||||
Sbjct 1234051 GTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCT 1233992
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| ||| |||| | || || || | ||||||| ||| || | |||
Sbjct 1233991 GGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTC 1233932
Query 80502 ---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553
| || | || || || | ||| ||| |||| |||||| ||| |
Sbjct 1233931 CTTGAGCGAGTCCCACTCCCACAGGTCAGTGG----GCT-TGACATCCCACAAGTCAAAC 1233877
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||||| || || || || || ||| ||| | ||| || || ||||| |||||
Sbjct 1233876 TGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTG 1233817
Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673
|| | ||| || || ||||| ||||| || ||| |||||||| |||||||
Sbjct 1233816 GCAATCTCCATAGATGCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTC 1233757
Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733
| |||| || | || ||||| | | | || | ||| ||||||| ||
Sbjct 1233756 AACTCGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGA 1233697
Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAAT 80792
|||||||| || | | || || |||||||| |||| | | || | ||||| |||
Sbjct 1233696 CCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG-CCTCCTGAAC 1233638
Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852
||||| |||| |||||||| |||||| ||||| || ||| ||| ||||||||
Sbjct 1233637 GGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATC 1233578
Query 80853 ATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906
||||| |||| |||||| | || ||| | ||||| || || || ||
Sbjct 1233577 GTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAA 1233518
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
|| |||| ||||| || || ||||| |||| | | |||| ||||| || |||||
Sbjct 1233517 AGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCA 1233458
Query 80967 CAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024
| || || ||| || || |||||||| |||||||| |||| |||||| ||
Sbjct 1233457 GAGGTTGGAG--CTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 1233400
Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084
|||||||| ||| | ||| |||| ||||| ||| | || ||||||| || |||
Sbjct 1233399 TCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCAC 1233340
Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCT 81144
| || | || || |||||| ||||| || | | ||||| | ||
Sbjct 1233339 AGCTTCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGA 1233280
Query 81145 TCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203
| ||||| | | || | | ||| ||| ||| | ||||| ||||| ||||||||||
Sbjct 1233279 GCCTCGAATTCTTCGCCATAGCAGT-CAGCAAGGCCAGGGCATTCGTTGGGGCACATCAA 1233221
Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263
|||||| || ||||| ||| ||||||||| |||||||||||||| |||
Sbjct 1233220 AGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAG 1233161
Query 81264 GAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323
||||||||| ||| || |||| || | || ||||| ||| | || || || ||
Sbjct 1233160 GAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTC 1233101
Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCC 81380
| || || || ||||| ||||| || || | ||| | | || ||| |||
Sbjct 1233100 AAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCC 1233041
Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440
|||||||| |||||| | |||||| ||| || || || | ||| ||||||||||| |
Sbjct 1233040 ACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTT 1232981
Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500
|| |||||| || || | || || ||| | || || | | || ||
Sbjct 1232980 GGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAG 1232921
Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560
||||| ||||| | | ||| |||||| ||||| || | || || || || ||
Sbjct 1232920 GCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACC 1232861
Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620
||| ||||| || | |||||||| | || ||| || |||| |||| |||| | |
Sbjct 1232860 CTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA--GCTTGTGGG 1232803
Query 81621 G--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678
| || || ||||| || || || | || || | || | | | ||||| ||||
Sbjct 1232802 GTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGG 1232743
Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738
|| || || ||| || ||| | ||| || || || | ||| |||||||||| |
Sbjct 1232742 TATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATC 1232683
Query 81739 ATGTACTGGGG 81749
|||| ||| ||
Sbjct 1232682 ATGTGCTGTGG 1232672
Score = 120 bits (132), Expect = 3e-22
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 27405 AATGC--AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
||||| ||| || || ||||| || || |||||||| || || |||||||| |||||
Sbjct 2968947 AATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCC 2968888
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | || | ||| | ||| | || || ||||||||||||||||| || || ||
Sbjct 2968887 TCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGAT 2968828
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| | || || ||||| ||||| |||||||||| || ||||| | |||||
Sbjct 2968827 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTAC 2968768
Query 27583 AATGTCCAAAAGG 27595
|| |||| ||||
Sbjct 2968767 AACATCCAGAAGG 2968755
Score = 96.9 bits (106), Expect = 4e-15
Identities = 228/330 (69%), Gaps = 12/330 (4%)
Strand=Plus/Plus
Query 31219 GACGCCAACTGGGCCGGTACCCACAAGTCGC-ACGAGTGCACGCTTATTATTACCGAGGG 31277
|| ||||||| ||| || ||| | || || ||||||||||||| || | || || ||
Sbjct 4042637 GAAGCCAACTTGGCGGGAACC-AGGCGTGGCCACGAGTGCACGCTAATCTTGACTGAAGG 4042695
Query 31278 TGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTG-TTGTGGGGCGCAATGCGT-TC 31335
||||| || || | || ||| || |||| ||| || | | | | | ||| ||
Sbjct 4042696 AGACTCTGCCAAAGGTCTGGCTGTTTCTGGAC-GAGCCATTCTTGATCCCGAC-CGTATC 4042753
Query 31336 GGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTT 31395
|| ||||| || || || || || | || |||||||| ||||| ||| || | || |
Sbjct 4042754 GGCGTGTTCCCACTTCGTGGTAAACTGCTAAACGTTCGAGACGCTTCCATTGACCAAATC 4042813
Query 31396 ACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG-GCA-AGG 31453
|| | || ||||| || ||| | || || |||| || || |||| ||| | |
Sbjct 4042814 ACCAAAAACCAAGAGATTCAAAACATCAAGCAGTTCCTGGGTCTCAAGCACAAGCAGACG 4042873
Query 31454 TATA-TAATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGAT 31512
|| | | || || ||| | ||||| ||||||| ||||||||| ||| |||| |||
Sbjct 4042874 TACACTGAT--ACGAAGA-ACTTGCGTTACGGTCACCTCATGATCATGGCCGATCAGGAT 4042930
Query 31513 CTCGACGGCAGTCACATCAAGGGTCTTGTC 31542
| |||||| ||||| |||||||||||| ||
Sbjct 4042931 CACGACGGTAGTCATATCAAGGGTCTTCTC 4042960
>seq6
Length=3085841
Score = 185 bits (204), Expect = 1e-41
Identities = 172/216 (80%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || ||||| ||||| |||||| |||| |||||
Sbjct 760655 GTCAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGAC 760596
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || |||||||||||||| || ||||| |||||||||||||| ||
Sbjct 760595 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 760536
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|||||||||||||| || ||||| | ||| ||||| ||| || || || |||| |||||
Sbjct 760535 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGC-GATTACAACATCCAGAAGGA 760477
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || ||||| || ||| | |||||||| |||||
Sbjct 760476 GTCTACCCTTCACCTTGTCCTTCGTCTTCGTGGTGG 760441
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 760947 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 760888
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| ||||| | || || |||||||||||||| |||||||| ||||||
Sbjct 760887 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 760828
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| |||||||||||||||| || || || | ||||| ||
Sbjct 760827 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 760768
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| | || || || |||||
Sbjct 760767 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 760721
Score = 165 bits (182), Expect = 9e-36
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 1398279 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1398338
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| ||||| || ||||||
Sbjct 1398339 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1398398
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || |||||||||||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 1398399 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 1398457
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| |||| || || |||||
Sbjct 1398458 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1398505
Score = 158 bits (174), Expect = 1e-33
Identities = 175/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | ||||||||||| || || || || || |||||| |
Sbjct 760439 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 760380
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| | || ||||||||||||||||| || || || ||||||
Sbjct 760379 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 760320
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || || ||||||||||| || || || | ||| ||||| ||| ||||| ||
Sbjct 760319 CAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGC-GACTACAA 760261
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| ||| || || | ||| | || || || ||||| ||
Sbjct 760260 CATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGCCTGCGTGGTGGCCA 760210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310236035760
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