Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 1e-20
>seq6
Length=3085841
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| ||||||||||| | || || || |||||||| | ||
Sbjct 760439 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 760380
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | ||||| ||| ||||| ||||| || || || || || || ||
Sbjct 760379 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 760320
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| || || || |||||||| || ||| | ||| ||||||
Sbjct 760319 CAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAAC 760260
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || |||||| ||| | || ||||| | || |||| ||||||
Sbjct 760259 ATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGCCTGCGTGGTGGC 760212
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||| || | || || ||||| ||||||||| | || ||||| || || || | ||
Sbjct 760668 CATGCTTCTAGTCGTCAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCATC 760609
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | ||||| || || || ||||| || || || || ||||| ||
Sbjct 760608 CGATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 760549
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | || || || || | || ||| || ||| | |||||||||
Sbjct 760548 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAA 760489
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || | || | ||| | || ||||| ||
Sbjct 760488 CATCCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTTCGTGGTGGTAT 760438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918274960960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |