Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq6 167 5e-36
seq1 125 2e-23
>seq6
Length=3085841
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | || || | |||||
Sbjct 760736 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 760795
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| || || || ||||||||||||| || |||||||||
Sbjct 760796 TCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 760855
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || ||||| ||||| || || |||||||| ||||| |||
Sbjct 760856 TGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 760915
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | |||||
Sbjct 760916 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 760947
Score = 163 bits (180), Expect = 7e-35
Identities = 162/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | |||||||||||||| || ||||| || |||||||| ||||| |||||
Sbjct 760446 ACGAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGT 760505
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || || ||||| || || || ||||| ||||| | ||
Sbjct 760506 GCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACC 760565
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| || ||||| || || || ||||||||
Sbjct 760566 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCTCGAG 760625
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || ||||||||||| ||
Sbjct 760626 AGTGATGGTCTTGCCGGTGAGAGTCTTGAC 760655
Score = 163 bits (180), Expect = 7e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || ||||| | |||||
Sbjct 1398490 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 1398431
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| | || || ||||| || |||| || |||||||||
Sbjct 1398430 TCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1398371
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || ||||| || |||||||||
Sbjct 1398370 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 1398311
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 1398310 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1398276
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || ||| ||| || |||||||| || || ||||| | || |||
Sbjct 760228 AGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCT 760287
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||| ||||| || |||||||| || | || |||||||||
Sbjct 760288 TCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC 760347
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| || ||||| |||||||| ||||| || || || || ||||| |||
Sbjct 760348 TGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTC 760407
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | |||||| ||||| | ||||||
Sbjct 760408 TTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 760439
>seq1
Length=7294945
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | ||||| || ||||||||||| ||||||||
Sbjct 2968757 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 2968816
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || || || || || | ||| ||||||||||||||||| || || || |||
Sbjct 2968817 AATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 2968876
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 2968877 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 2968935
Score = 93.3 bits (102), Expect = 1e-13
Identities = 185/273 (68%), Gaps = 6/273 (2%)
Strand=Plus/Minus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGG 178142
|||| | |||||| ||||||||||| | |||| |||||| ||||| || ||||
Sbjct 1233437 TTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAAAGCATAAAGG 1233381
Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202
| | || ||||| || ||| | || ||| | ||| |||| ||| ||||||| ||
Sbjct 1233380 GGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGATAG 1233321
Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262
|||| | || || || ||||||||||| | || || |||||||||| ||||
Sbjct 1233320 TCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCAT 1233261
Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322
|| ||| | || || || || |||||||| | | | |||| | || | ||
Sbjct 1233260 AGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCT 1233201
Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355
|| || |||||||| || |||| | ||||||
Sbjct 1233200 CAACACGCTTCATGAACAGATCAGGGATCCAGA 1233168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151658412395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |