Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq7 140 3e-28
>seq7
Length=2824016
Score = 140 bits (154), Expect = 3e-28
Identities = 544/846 (64%), Gaps = 17/846 (2%)
Strand=Plus/Minus
Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316
|||||||| ||| || ||||| |||||||| || || ||||| | | || || ||
Sbjct 1203420 TTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 1203361
Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376
||||| || ||||| || || | | |||||| || || ||||| || |||
Sbjct 1203360 TCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGC 1203301
Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436
| || || || ||||| || || ||||| |||| || | ||| || || | |
Sbjct 1203300 AGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA 1203241
Query 4437 CTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495
|||||| || || | ||||| || ||||| || || | ||||| || ||||| ||
Sbjct 1203240 G-CACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGTGATGAT 1203182
Query 4496 ATCTTTTATTTTATCTTTAGATGGT----TTATTTAC-TAAGTATCCAAACAATAAACAC 4550
|| || | || || | ||| || || | | || | | | ||
Sbjct 1203181 TTCACGGATAATCTCCTT-GCTGGCGCGGTTCTTCAGGTGAGAGTGGAGC----AGGCAA 1203127
Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610
||||| || |||| ||| ||||| | || || ||||| || || || | ||
Sbjct 1203126 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 1203067
Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670
||||| | ||||||||| || ||||| || || | |||||| | || ||||| ||
Sbjct 1203066 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 1203007
Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730
|| || ||||| ||||| || || | || | || || | | ||||| | |||
Sbjct 1203006 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATC 1202947
Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790
|| || | ||||||| ||| || || | ||| ||||| || | || ||||| ||
Sbjct 1202946 CACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAG 1202887
Query 4791 AATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849
| | | || || | || | | || ||||| || || ||| || | ||
Sbjct 1202886 AGGT-AGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 1202828
Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909
|| || || || || || ||||| || ||||| ||||||| ||| || | | ||
Sbjct 1202827 GGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTG 1202768
Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969
||| ||| | || | || || | ||| ||||| || || ||||| ||| |||||
Sbjct 1202767 AACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAA 1202708
Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTG 5026
|| ||||| | ||||| || ||||||| |||||| || || || |||||||
Sbjct 1202707 GAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTC 1202648
Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086
| ||| ||| || | | ||||| ||||| | ||||| || || || || || |||||
Sbjct 1202647 GTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTT 1202588
Query 5087 GTACAT 5092
||||||
Sbjct 1202587 GTACAT 1202582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427049480292659
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |