Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7 140 3e-28 >seq7 Length=2824016 Score = 140 bits (154), Expect = 3e-28 Identities = 544/846 (64%), Gaps = 17/846 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||| ||| || ||||| |||||||| || || ||||| | | || || || Sbjct 1203420 TTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 1203361 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| || ||||| || || | | |||||| || || ||||| || ||| Sbjct 1203360 TCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGC 1203301 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || || || ||||| || || ||||| |||| || | ||| || || | | Sbjct 1203300 AGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA 1203241 Query 4437 CTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 |||||| || || | ||||| || ||||| || || | ||||| || ||||| || Sbjct 1203240 G-CACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGTGATGAT 1203182 Query 4496 ATCTTTTATTTTATCTTTAGATGGT----TTATTTAC-TAAGTATCCAAACAATAAACAC 4550 || || | || || | ||| || || | | || | | | || Sbjct 1203181 TTCACGGATAATCTCCTT-GCTGGCGCGGTTCTTCAGGTGAGAGTGGAGC----AGGCAA 1203127 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| || |||| ||| ||||| | || || ||||| || || || | || Sbjct 1203126 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 1203067 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||||||||| || ||||| || || | |||||| | || ||||| || Sbjct 1203066 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 1203007 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 || || ||||| ||||| || || | || | || || | | ||||| | ||| Sbjct 1203006 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATC 1202947 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || || | ||||||| ||| || || | ||| ||||| || | || ||||| || Sbjct 1202946 CACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAG 1202887 Query 4791 AATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | || || | || | | || ||||| || || ||| || | || Sbjct 1202886 AGGT-AGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 1202828 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 || || || || || || ||||| || ||||| ||||||| ||| || | | || Sbjct 1202827 GGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTG 1202768 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||| ||| | || | || || | ||| ||||| || || ||||| ||| ||||| Sbjct 1202767 AACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAA 1202708 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTG 5026 || ||||| | ||||| || ||||||| |||||| || || || ||||||| Sbjct 1202707 GAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTC 1202648 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | ||| ||| || | | ||||| ||||| | ||||| || || || || || ||||| Sbjct 1202647 GTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTT 1202588 Query 5087 GTACAT 5092 |||||| Sbjct 1202587 GTACAT 1202582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049480292659