Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 152 7e-32 seq7 104 3e-17 >seq1 Length=7294945 Score = 152 bits (168), Expect = 7e-32 Identities = 442/678 (65%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGT-CACCATCTTCCTTAACTCGTTTCAT 78013 ||||||||||| || ||||||||||| | ||||| || |||| || ||| || ||||| Sbjct 1233246 CCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTT-CTCAACACGCTTCAT 1233188 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || |||||||| ||||| ||||| | || || || |||| | ||||| || || Sbjct 1233187 GAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCC 1233128 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||||| || || || ||||| | | ||| | ||||| || || || || || Sbjct 1233127 GTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGAT 1233068 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | ||||| || || || || ||||| || | |||||||| ||||| || | Sbjct 1233067 GGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAA 1233008 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||| | ||| || || |||||||| || || || || || || | ||| ||| || Sbjct 1233007 GACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCC 1232948 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | || || ||| | | | || || || || |||||||| || || | || Sbjct 1232947 CGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGC 1232888 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || || | || |||||||||||||| || ||||| ||| |||||| | || || Sbjct 1232887 ACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAA 1232828 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || |||| ||| || || || || || || | || ||||| ||||| || Sbjct 1232827 GCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGT 1232768 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||| |||| || | || | |||||| |||| | || |||| | Sbjct 1232767 AAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCA 1232708 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 || || || || |||||||| | ||| ||||| |||| ||||| |||| || | Sbjct 1232707 AACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAG 1232648 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 |||| | ||||| |||| || || || || || || | ||| ||||||| Sbjct 1232647 CTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCG 1232588 Query 78614 CTCGTAAATAATAACAGA 78631 ||||| | ||| |||| Sbjct 1232587 GTCGTAGACAATGGCAGA 1232570 >seq7 Length=2824016 Score = 104 bits (114), Expect = 3e-17 Identities = 335/516 (65%), Gaps = 8/516 (2%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || ||||| || || | || |||||||| || || | || Sbjct 1203087 TCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCA 1203028 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC---G 48299 || | ||| ||||| || || || ||||| ||||| || ||| | || | | Sbjct 1203027 AAGGCTCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAG 1202968 Query 48300 TAACTGGCTTCGTTGTGTATCCACC-GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 || | | | || || |||||| | || ||||| ||||||||||| | ||||| Sbjct 1202967 GAAGAGTCCTTGTCCTGGATCCACTTGATG-GCCCAGTCAGCCTTCTTACGGATGCAAGG 1202909 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATC 48418 || || || || || || ||||| |||| | || || || ||||| || || Sbjct 1202908 AATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTC 1202849 Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 || | || || | |||||||| || || || || ||||| || ||||| || Sbjct 1202848 GATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAA 1202789 Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538 |||| || || | |||||| ||||| | || || || ||| ||||| || || Sbjct 1202788 GCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGAC 1202729 Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598 || || || |||||||| || || || | || || || || || |||| Sbjct 1202728 AATGCCGTCGGAGGCAGCAAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATC 1202669 Query 48599 AGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 ||| | || |||||||| | | ||| || || | ||| | ||||| || ||||| Sbjct 1202668 GTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 1202609 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || ||||| || ||||| ||||| | ||| || Sbjct 1202608 GAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 1202573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668600282720