Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 7e-32
seq7 104 3e-17
>seq1
Length=7294945
Score = 152 bits (168), Expect = 7e-32
Identities = 442/678 (65%), Gaps = 2/678 (0%)
Strand=Plus/Minus
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGT-CACCATCTTCCTTAACTCGTTTCAT 78013
||||||||||| || ||||||||||| | ||||| || |||| || ||| || |||||
Sbjct 1233246 CCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTT-CTCAACACGCTTCAT 1233188
Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073
|| |||||||| ||||| ||||| | || || || |||| | ||||| || ||
Sbjct 1233187 GAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCC 1233128
Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133
||||| || || || ||||| | | ||| | ||||| || || || || ||
Sbjct 1233127 GTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGAT 1233068
Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193
|| | | ||||| || || || || ||||| || | |||||||| ||||| || |
Sbjct 1233067 GGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAA 1233008
Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253
|||| | ||| || || |||||||| || || || || || || | ||| ||| ||
Sbjct 1233007 GACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCC 1232948
Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313
| || || ||| | | | || || || || |||||||| || || | ||
Sbjct 1232947 CGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGC 1232888
Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373
|| || | || |||||||||||||| || ||||| ||| |||||| | || ||
Sbjct 1232887 ACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAA 1232828
Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433
|| |||| ||| || || || || || || | || ||||| ||||| ||
Sbjct 1232827 GCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGT 1232768
Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493
||| |||| || | || | |||||| |||| | || |||| |
Sbjct 1232767 AAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCA 1232708
Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553
|| || || || |||||||| | ||| ||||| |||| ||||| |||| || |
Sbjct 1232707 AACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAG 1232648
Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613
|||| | ||||| |||| || || || || || || | ||| |||||||
Sbjct 1232647 CTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCG 1232588
Query 78614 CTCGTAAATAATAACAGA 78631
||||| | ||| ||||
Sbjct 1232587 GTCGTAGACAATGGCAGA 1232570
>seq7
Length=2824016
Score = 104 bits (114), Expect = 3e-17
Identities = 335/516 (65%), Gaps = 8/516 (2%)
Strand=Plus/Minus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || || || || || ||||| || || | || |||||||| || || | ||
Sbjct 1203087 TCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCA 1203028
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC---G 48299
|| | ||| ||||| || || || ||||| ||||| || ||| | || | |
Sbjct 1203027 AAGGCTCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAG 1202968
Query 48300 TAACTGGCTTCGTTGTGTATCCACC-GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358
|| | | | || || |||||| | || ||||| ||||||||||| | |||||
Sbjct 1202967 GAAGAGTCCTTGTCCTGGATCCACTTGATG-GCCCAGTCAGCCTTCTTACGGATGCAAGG 1202909
Query 48359 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATC 48418
|| || || || || || ||||| |||| | || || || ||||| || ||
Sbjct 1202908 AATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTC 1202849
Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478
|| | || || | |||||||| || || || || ||||| || ||||| ||
Sbjct 1202848 GATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAA 1202789
Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538
|||| || || | |||||| ||||| | || || || ||| ||||| || ||
Sbjct 1202788 GCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGAC 1202729
Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598
|| || || |||||||| || || || | || || || || || ||||
Sbjct 1202728 AATGCCGTCGGAGGCAGCAAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATC 1202669
Query 48599 AGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655
||| | || |||||||| | | ||| || || | ||| | ||||| || |||||
Sbjct 1202668 GTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 1202609
Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
|| || ||||| || ||||| ||||| | ||| ||
Sbjct 1202608 GAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 1202573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668600282720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |