Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23]
381 sequences; 37,970,415 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 2e-21
>seq3
Length=984773
Score = 118 bits (130), Expect = 2e-21
Identities = 317/474 (67%), Gaps = 8/474 (2%)
Strand=Plus/Plus
Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228
|| |||||| |||||||||| |||| | ||||| ||||| || | ||| | ||||
Sbjct 414944 TCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTAT-CT-TCTTCAGCGGAG 415001
Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287
| ||| ||||||| ||||| ||| | |||| | ||||||||||| | || |
Sbjct 415002 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 415061
Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCA 230346
||||| | ||| ||| || |||||||| || || | | || || | | | ||
Sbjct 415062 ACGAGCTAATCTCTCGTGATGAGGGTCTGCA-CACCGACTTTGCTTGCCTGCTCCACTCT 415120
Query 230347 AAGCTCCAGAACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405
| || ||||| || | || |||| || | ||||| || || || ||
Sbjct 415121 CACCTGAAGAACCGCGCCAGCAAG-GAGATTATCCGTGAGATCATCACTGATGCCGTCAG 415179
Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGA 230465
|| ||| |||||||| | || ||| | || ||| || | |||||||||||
Sbjct 415180 AATCGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCAC 415239
Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525
|| ||| |||||||| || || || ||||| || | | || || || || ||||
Sbjct 415240 GCTGATGAAGCAGTACATTGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCAACGA 415299
Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585
||| | ||||| || |||||||| | || |||||| ||| || || || ||
Sbjct 415300 GAAGATCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAA 415359
Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
||||||||||||||| ||||| || | || ||||||| | ||||||| |||||
Sbjct 415360 GACCAACTTCTTCGAGAAGCGCGTTGGCGAGTATCAGAAGGCTGGTGTCATGAA 415413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057818836166030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |