Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 129 6e-25 >seq3 Length=984773 Score = 129 bits (142), Expect = 6e-25 Identities = 348/527 (66%), Gaps = 13/527 (2%) Strand=Plus/Minus Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 ||| || ||||| || || |||| || ||||| |||| ||||| | ||| || || Sbjct 415072 GATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGAT 415013 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 | ||| || | || ||||| |||||||| |||| ||||| || | | || | Sbjct 415012 GGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACGGCAGCAAAGGCAACGAGACGCTG 414953 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTA 17177 ||| | | | ||| |||| ||||||| || |||| ||||| || |||| | Sbjct 414952 GGCAAAGGAAGAGTCCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTCTTGCGA-A 414894 Query 17178 TGCAATCCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATA 17236 ||||| || || || ||||| || || | | || | |||| | || | | Sbjct 414893 TGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGT-GCTCCTTGACG 414835 Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || || |||||||| || ||| | |||||||| ||||||||||| ||||| || Sbjct 414834 TAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAA 414775 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 ||||| |||||||| || || | || ||||| || || ||| || || | || || Sbjct 414774 CCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTC 414715 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTT 17416 ||||| || ||||||||| || || || || |||| || || ||||| || || Sbjct 414714 TCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTC 414655 Query 17417 TCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 ||||| | || ||| |||||| | | ||| ||||| | ||| | || Sbjct 414654 TCGTCATCGTTCAG---GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCC 414598 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||| |||||| || |||| | |||||||| ||||| | ||| || Sbjct 414597 TCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543135189080