Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 105 7e-18 >seq3 Length=984773 Score = 105 bits (116), Expect = 7e-18 Identities = 178/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||||||||| | || Sbjct 414807 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || || || || || |||||||||| || || || ||||| |||||| Sbjct 414747 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCA 414688 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATATGCCAA 16678 || || |||| ||||| ||||| || || |||||| | | | | | ||| Sbjct 414687 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 414628 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 || | | ||| ||||| | ||| | || || | ||||| ||| |||| | |||||| Sbjct 414627 TCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTT 414568 Query 16739 TTATACATTTTCCAAAT 16755 || ||||||| ||| || Sbjct 414567 TTGTACATTTGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411964388920