Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-28 >seq3 Length=984773 Score = 140 bits (154), Expect = 4e-28 Identities = 368/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| |||||||| || | | |||| |||||||| || || || Sbjct 415107 CAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGG 415048 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || | ||| || ||||| || ||||| ||||| | ||| ||||| Sbjct 415047 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAG 414988 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 || || || || || |||||||||| || | | || | | | | |||| || Sbjct 414987 ATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGA 414928 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||||| ||||| ||||||||||| | ||||| || ||||| || || || Sbjct 414927 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 414868 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 ||||| ||| | | | || || || || || || || | ||| || | Sbjct 414867 AAGAGGTAGCTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTC 414808 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || || ||||| || || || || || |||||||| |||| |||||||| ||| Sbjct 414807 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || | || || || | | || || || || || ||||| ||| ||| Sbjct 414747 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCA 414688 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 24607 || || |||| | || || || || || ||||| | || | | | || ||||| Sbjct 414687 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 414629 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | | ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 414628 GTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 414569 Query 24668 TTTATACATATTCCAGAT 24685 ||| ||||| | |||||| Sbjct 414568 TTTGTACATTTGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718772400880