Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 >seq1 Length=1198811 Score = 161 bits (178), Expect = 1e-34 Identities = 279/402 (69%), Gaps = 10/402 (2%) Strand=Plus/Minus Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 |||||||||||| | | ||||||||||||||| |||||| | |||| ||| Sbjct 1128508 ACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGAGCCATGCTCTTAAAGTCCTTTGGG 1128449 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTG---ATCTCCCCTATC 145986 ||||| ||| |||||| | || | | | |||| || ||| | || || Sbjct 1128448 TTCCATGCGCTGAGGATCATTCTGCGGTCGTAGGGG---CTGTTGCGCAGCTTGTGGATA 1128392 Query 145987 AGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCG 146046 | || |||||||| ||||||| || ||| ||||| | | || || || | Sbjct 1128391 ATCTCGGCCAGCTGGTCGACGCCCTTGCCGGCGTAGTCTGTTTGAGCATCGACATATTCT 1128332 Query 146047 GCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGC 146106 || || ||||||| ||||||||| ||||||||||| || ||||| ||| || | ||| Sbjct 1128331 GCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGG 1128272 Query 146107 CCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC- 146165 || || | | | ||||||| || ||||| |||||| ||||||||||||||||||| Sbjct 1128271 GTGAGGCCCACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCG 1128212 Query 146166 -CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGA 146224 | |||| ||| | | ||||| ||| ||| |||||||||||| ||||| ||| Sbjct 1128211 ACGTCGCTGAGGG--CGGTGGAGGAGGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGA 1128154 Query 146225 GGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 ||| | | |||||| | ||||||||| |||||||||| Sbjct 1128153 TGACGGCGCGGAGGAAGACTCGCTTGGTGGTGAGCAGGGGGA 1128112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590073989759240