Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 343 2e-89 seq25 143 3e-29 seq24 131 2e-25 seq11 113 5e-20 >seq3 Length=984773 Score = 343 bits (380), Expect = 2e-89 Identities = 566/808 (70%), Gaps = 15/808 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||||||| | || ||| Sbjct 414551 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 414610 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 414611 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 414670 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| || || ||| ||||||||| ||||||||||| |||||||||||| Sbjct 414671 CACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGT 414730 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || ||||||||||| || |||||| ||| Sbjct 414731 TTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATG 414790 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | || || ||||||||||| ||||| | || | Sbjct 414791 GAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACCTACGTCAAGGAGCAC--A 414848 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | |||| | | || |||||||| ||||| || || ||| | ||||||| Sbjct 414849 GCCAGCGCAGCTAC--CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 414906 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| | ||||| | || || | |||| | | |||| || || || Sbjct 414907 CGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTGC 414966 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || ||||| ||||| ||||||| || || ||| |||| || |||||||| Sbjct 414967 CTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 415026 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| | || |||||||| |||||||| ||| ||||||||| ||||| | || ||||| Sbjct 415027 GAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGATGAGGG 415086 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 |||||| ||||||||| || |||| | || || | | || | ||| || Sbjct 415087 TCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGA 415146 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || | |||||| |||| || || ||| ||||||||| ||| | ||||| || Sbjct 415147 GATTATCCGTGAGATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACCGAGGC 415206 Query 117289 GCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 || || |||| ||||||||| | || || | | |||| ||| ||||| ||||| Sbjct 415207 TCTCCCCTGTGC-TCTGCTGGGCATGAA-CGCCACGCTGATGAAGCAGTACATTGAGTTT 415264 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 |||||||| | ||||| ||| || | | || ||| |||||| | ||||||| Sbjct 415265 GTCGCCGATCGTCTGCTCGTCGCTCTCGGCAACGAGAAGATCTACAAGTCCTCCAACCCC 415324 Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | ||||||| ||| Sbjct 415325 TTCGACTTCATGGAGAACATCTCCCTGG 415352 >seq25 Length=464062 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 387718 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 387777 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 387778 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 387836 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | |||| || || || ||||| || || | |||||||| | |||||| Sbjct 387837 CCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 387896 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || || ||||| || | || || Sbjct 387897 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 387947 >seq24 Length=472585 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || || || | | Sbjct 84800 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACACTAGAAGTGGAGTCATCT 84859 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| ||| |||| ||||| |||||||| ||| | ||||| Sbjct 84860 GATACCATCGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCA 84918 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| |||||||| | ||||||||| Sbjct 84919 GCAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 84978 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 84979 CATCCAGAAGGAGAGCACCCTGCA 85002 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| |||| ||||| | |||| | | | Sbjct 84582 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTG 84641 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| ||||| | |||||||| || ||| Sbjct 84642 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTC 84700 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || || || ||||| || |||| |||||||| | ||| ||||||||||||||| Sbjct 84701 ATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAG 84760 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| | || || || || || Sbjct 84761 GAGTCTACTCTCCACCTGGT 84780 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| |||| || || | || Sbjct 84287 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTGGAGTCTTCC 84346 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || |||| ||||| |||||||| || | |||||| Sbjct 84347 GACACTATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 84406 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 84407 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 84466 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 84467 ATCCAGAAGGAGTCTACCCTCCACCTGGT 84495 >seq11 Length=641957 Score = 113 bits (124), Expect = 5e-20 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||| || | ||||| || || || |||||||| ||||||||| | || ||||| | Sbjct 26348 AAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTC 26407 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| || || | ||||| ||||| || ||| |||| Sbjct 26408 CTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGA 26467 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| ||| | |||| ||| ||||| ||||| || || | || ||||| ||||| Sbjct 26468 TCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTTTCTGACTA 26527 Query 40866 CAACATCCAGAAGG 40879 |||||||||||||| Sbjct 26528 CAACATCCAGAAGG 26541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216746268560