Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq24 132 4e-26 seq25 125 6e-24 seq3 95.1 1e-14 seq11 87.8 2e-12 >seq24 Length=472585 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| ||| || ||| || ||||||| Sbjct 84495 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 84436 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || |||||| |||| ||||||||||| || ||||| |||||||||||||| | Sbjct 84435 AGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 84376 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | ||| ||||||| || | || ||| Sbjct 84375 ATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTCTTG 84316 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| || || || || || || ||||||| Sbjct 84315 CCGGTGAGGGTCTTGACGAAGATTTGCATGG 84285 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||||||||||| ||||| |||||| Sbjct 84780 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCG 84721 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||||||||||||||| |||||||| || ||||||||||| Sbjct 84720 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 84661 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||||||||||| || | || ||| Sbjct 84660 ATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTG 84601 Query 118710 CCGGTCAGAGTTTTTAC 118726 || || || || || || Sbjct 84600 CCAGTGAGGGTCTTGAC 84584 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||| || || |||||||| ||||||| ||||| || || Sbjct 85008 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 84949 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || |||||||| || || || |||||||||||||| | Sbjct 84948 AGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 84889 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| ||| || | ||| || || | || | || ||| Sbjct 84888 ATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCTAGTGTGATGGTCTTG 84829 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || ||||| |||||||| Sbjct 84828 CCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 >seq25 Length=464062 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 387929 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 387870 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| | |||||||| || || || |||||||||||||| Sbjct 387869 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 387810 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 387809 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 387750 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 387749 CCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 >seq3 Length=984773 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45086 ATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGCGAAT 45145 |||||| ||| || || | |||||||| ||| | || |||| |||||||| | Sbjct 415181 ATCGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACG 415240 Query 45146 ATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATCCC 45205 |||||| |||||||||||||||||||||||||||| |||||| | | Sbjct 415241 CTGATGAAGCAGTACATTGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCAACGAG 415300 Query 45206 AAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAA 45265 ||||| ||| | | ||||| ||||| || ||| | || || || ||| ||||| Sbjct 415301 AAGATCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAG 415360 Query 45266 ACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 || || || || ||||| ||||| ||||| || Sbjct 415361 ACCAACTTCTTCGAGAAGCGCGTTGGCGAGTA 415392 >seq11 Length=641957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||||||||| || |||||| |||| | ||||||||||| || || || |||||||| Sbjct 26507 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGAATTCCCTCCTT 26448 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || || || || | |||| ||||| | | ||||||||| | ||| | Sbjct 26447 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGAT 26388 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 || ||||| ||||| || || || ||| Sbjct 26387 GGTCTTGCCCGTCAGGGTCTTCACGAAA 26360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828385535652