Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq24 125 5e-24 seq25 91.5 1e-13 seq11 89.7 3e-13 >seq24 Length=472585 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || || || ||||| |||||||||||| | Sbjct 85026 CCACCACGCAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 84967 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| |||||| || ||||| || || ||||||||||| ||| Sbjct 84966 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGA 84907 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | | | | || | ||| | || || || Sbjct 84906 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACT 84847 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| | ||| || |||||||||||||| Sbjct 84846 TCTAGTGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| ||| | || Sbjct 84498 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 84439 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || || ||||||||||| || | || ||||||||| Sbjct 84438 TCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 84379 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| || || || || | |||||||| Sbjct 84378 TGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTC 84319 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||| ||||| Sbjct 84318 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 84287 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| || ||||| |||||||| ||| ||| || |||| Sbjct 84783 AGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 84724 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || ||||| |||||||||||| || | | ||||||||| Sbjct 84723 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 84664 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||||| || ||||| || | |||||||| Sbjct 84663 TGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTC 84604 Query 34358 TTGCCGGTGAGAGTTTTCAC 34377 ||||| ||||| || || || Sbjct 84603 TTGCCAGTGAGGGTCTTGAC 84584 >seq25 Length=464062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||||||| | || || ||||| |||||||||||| | Sbjct 387947 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 387888 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || || || || | ||||||||||| ||| Sbjct 387887 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 387828 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 387827 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 387768 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || ||||| || || || || ||||||||| Sbjct 387767 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 387720 >seq11 Length=641957 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || || ||| | || || | ||||||||| ||||| || Sbjct 26539 TTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 26480 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | |||||||| || ||| | | ||||||||| ||||| ||| | || | | Sbjct 26479 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 26420 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 |||| |||| || ||||| || | |||||||| ||||| || || || ||||| || Sbjct 26419 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 26361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070499835360