Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq9 149 1e-30 seq36 87.8 4e-12 >seq9 Length=716796 Score = 149 bits (164), Expect = 1e-30 Identities = 413/627 (66%), Gaps = 21/627 (3%) Strand=Plus/Plus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | ||| || | ||| | | ||| | ||||| || |||||| | Sbjct 52778 GCCATTGTCTACGACCGAGACTTCAACTACCAATACTTCGGCTTCAAGACACTGGAGCGA 52837 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || |||||||| ||| ||||||||||||| || || ||| ||||||||| | ||||| Sbjct 52838 TCATATCTCCTGAAACTTGATGGCAAGATTGTTGAGCGACCACAGCACATGATTATGCGT 52897 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 |||||||| || || || |||| ||| | || || ||||| ||| | ||| Sbjct 52898 GTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTCCTTGAGACATACCACCTCATG 52957 Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 || | || | || |||||| | || || ||||||||||| |||||| | | Sbjct 52958 TCCAGCAAGTTCT---TTACCCATGCCTCCCCCACTCTCTTCAACGCTGGTACC--CCGC 53012 Query 249028 AA--TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085 || ||||||| ||| ||||| || | | |||| | |||||| | || || || | Sbjct 53013 AAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATCT 53072 Query 249086 ATGACACGCTTAAACAGACG-GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144 | ||||| || || | | | || | |||||| || | || || || ||||| || | Sbjct 53073 ACGACAC-TTTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTGAAC 53131 Query 249145 GTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGT 249204 ||| | ||||| || | ||| || ||||| || || || || | | ||| Sbjct 53132 GTCCACCGTATCCGTGCCACGGGCTCTTACATTGCCGGCACCAACGGTACCTCCAACGGT 53191 Query 249205 ATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG---- 249260 ||| | ||| | |||||| ||| | ||| ||||| | | || |||||| || Sbjct 53192 ATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTGGCAAC 53251 Query 249261 --GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAG 249318 ||||| || | || ||||| || | || |||||||| ||| | || ||| Sbjct 53252 AAGCGCC---CTGGAGCCTTTGCCATCTACCTCGAGCCTTGGCACGCTGATGTTTTTGAG 53308 Query 249319 TTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTAC 249378 ||||| ||| | |||||| ||||||| || | | || |||||||| ||| | Sbjct 53309 TTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGTGACCTGTTCCTC 53368 Query 249379 GGCCTGTGGGTCTCCGACTTGTTCATG 249405 | || ||| || | || |||||||| Sbjct 53369 GCTCTCTGGATCCCTGATCTGTTCATG 53395 >seq36 Length=374512 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||||||||| ||||| || |||| || ||||| || ||||| || || ||||||||||| Sbjct 261865 CCTTCCTCACCTGCTTCTCTACGGCCCGCCCGGTACGGGCAAAACATCGACCATCCTGGC 261924 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || || || | | |||| |||||| | || ||||| || |||||||| Sbjct 261925 CCTCGCGCGGCGGATCTACGGCGCCTCCAACATGCGGCAGATGGTGCTGGAACTGAACGC 261984 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| | || | ||||| || ||||| |||||||||| || Sbjct 261985 CTCAGACGACAGAGGCATCGACGTGGTACGCGAGCAGATCAAGACGTT 262032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761158342208