Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq24 138 9e-28 seq25 120 2e-22 >seq24 Length=472585 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| |||||||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 85008 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 84949 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | |||||||||||| | Sbjct 84948 AGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 84889 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || |||||| || | || || |||||| Sbjct 84888 ATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCTAGTGTGATGGTCTTG 84829 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| |||||||| ||||| Sbjct 84828 CCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184 |||| ||| || || ||||||||| |||||||||||| ||| | ||| ||| ||| Sbjct 84495 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 84436 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || ||||| |||| ||||| ||||| ||||| | |||||||||||| Sbjct 84435 ---AGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 84379 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | |||| | ||||||||| | || || ||| Sbjct 84378 TGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTC 84319 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || ||||| || |||||||||||| Sbjct 84318 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 84286 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||| ||| |||| |||| |||| || Sbjct 84780 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCG 84721 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || || | ||||| ||||||||||| | ||||||||||||| Sbjct 84720 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 84664 >seq25 Length=464062 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| |||| ||| | || || Sbjct 387929 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 387870 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| ||||| ||||| || || | |||||||||||| Sbjct 387869 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 387810 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 387809 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 387750 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || || || ||||| |||||| Sbjct 387749 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 387714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073365493001