Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 324 1e-83 seq3 183 3e-41 seq24 105 6e-18 seq25 96.9 3e-15 >seq9 Length=716796 Score = 324 bits (358), Expect = 1e-83 Identities = 1213/1889 (64%), Gaps = 37/1889 (2%) Strand=Plus/Minus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || ||||| ||||| || | || || | | ||| || || || |||||| Sbjct 54645 TCTTGATCAACTGTGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGTAGGTAGTACATG 54586 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| ||||| | |||||| | || || || || | || || | Sbjct 54585 CCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATTGTG 54526 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||||| | || || ||||| ||| || || || || || || ||||| Sbjct 54525 GGATCCTTCATGTGAATGTTCAAGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCT 54466 Query 22283 GCCATATTTATCAATGT-ACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGAT 22341 | ||| | | | |||| |||| || || ||||| || ||||||||||| | |||| Sbjct 54465 GACATCTGGA-CGATGTGACGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGAT 54407 Query 22342 CTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 || || || | | || | |||||| || ||||| | ||||| || | Sbjct 54406 GTCGGCGGGAAT-GTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCT 54348 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | || | |||| ||| | || | || | ||| |||| || |||| || | Sbjct 54347 TCATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAA 54288 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 | || |||||||| | | ||| || || ||||| |||||||| ||| | || ||||| Sbjct 54287 CCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGC 54228 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 |||||||||| || || ||||| | || || || ||||| || || | || | Sbjct 54227 ATTCATTGTTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAAC 54168 Query 22581 AGTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGAT 22637 ||| | | ||||||| |||| ||| ||| ||||| ||| ||||| || | Sbjct 54167 TGTTGCGAATACCGTGCTCCTTGA---TTTGCTCCTTGAGGGAGTCCCACTCCCAGAGGT 54111 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG-GCTG 22696 | | ||| | || |||||||| || | || | | ||| | || || | | Sbjct 54110 CAGTGGGCTTGAC---GTCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATC 54054 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 |||| | | | || || ||||| | ||| ||||| || | ||||| | || Sbjct 54053 CCTT-GAATGACTCATAGGGACCCTCGATCTTGGCAATCTCCATGGATGCCTCAAGGGCA 53995 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 ||| || |||||||| ||||||| ||||||||| ||| || || |||| | Sbjct 53994 GCGTGGTAGATAGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAG 53935 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 || | ||||| | ||| ||||| || | |||||| || || | ||| || |||||| Sbjct 53934 GGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGGACACCGACACCAATGGGTCGG 53875 Query 22877 TT-------TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929 | || | | | ||| ||||| | | || || | ||| |||||| Sbjct 53874 TGGCGGCTGTTGCTGTTGCGA-------GCCTCCTGAACGGGGTAGTAGTTCACATCGAT 53822 Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | | ||| | ||| | | || | || || | | ||||| || Sbjct 53821 GATGCGGTTGAGGTTACGGACAACCACCTTGGTAACGTCGTGAAGCTTCTTGAAGTCATA 53762 Query 22990 AACGCC--CGATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 ||| || || || | ||||| || || | ||||| | ||||| || | Sbjct 53761 GCAGCCTTCG-TTATAGTCGACAAATGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAG 53703 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | |||||||| || | |||||| | || ||||| || || ||| | || | Sbjct 53702 CGACCTCGTCAGGGGCAGAGTACTCAATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGG 53643 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||||||| || || ||||| | ||||||||| |||||| | || Sbjct 53642 TTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGT 53583 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 |||| ||||| ||| | ||| | ||| | ||||| ||||||| | | | ||| Sbjct 53582 TGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACAGCTTCTGAGCTCGGATA-GTC 53524 Query 23226 GCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 || ||| ||||| | ||| ||||| | |||| ||| || ||||| | || || Sbjct 53523 TTGCGACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCGAATTCTTCGCCATAG 53464 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 ||||| || ||||| || ||| | || ||||| | | |||| ||| || ||| Sbjct 53463 CAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCA 53404 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || || |||| || ||||| || ||||| |||||| |||||| || ||||| || ||| Sbjct 53403 ACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACC 53344 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 || || |||||| |||||| | || | || || || || || || ||||| ||| Sbjct 53343 TCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGC 53284 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 |||||||| | |||||| || || || | ||| ||||| ||||| |||||||| | ||| Sbjct 53283 TCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCA 53224 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 ||||||||| | |||| ||||| || | || ||||||||| | ||| ||| || Sbjct 53223 GTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCA 53164 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | || || | || || | ||| |||| | || || || || || || Sbjct 53163 ATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTG 53104 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || ||||| || ||| |||| |||||||||||| ||||| |||||||| || || | Sbjct 53103 GAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATG 53044 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 | |||| ||| || || |||| || |||| || ||| | || ||| || || ||| Sbjct 53043 TCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGAGTGGGG 52984 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 ||| || |||||| | | ||||| || | ||| || || | | | |||||| Sbjct 52983 GAGGCATGGGTAAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATG 52924 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTG 23884 | ||||| | || | || || ||||| ||||||| || |||| ||| || | Sbjct 52923 TTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATC 52864 Query 23885 ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 ||| | || ||| | |||||||| || | || || || || || || || | ||| Sbjct 52863 TTGCCATCAAGTTTCAGGAGATATGATCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAG 52804 Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||| || |||| || ||||| || Sbjct 52803 TTGAAGTCTCGGTCGTAGACAATGGCAGA 52775 >seq3 Length=984773 Score = 183 bits (202), Expect = 3e-41 Identities = 492/737 (67%), Gaps = 33/737 (4%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || || || || ||||||| ||| || | || ||| Sbjct 414551 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 414610 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGA-GAGAA--ATTTTATT 57683 || ||||||||| ||| ||| | ||| || || ||| ||||| | || || Sbjct 414611 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 414667 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || || || ||||| || ||||| |||||||| |||||| Sbjct 414668 TCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCG-- 414725 Query 57744 AGATTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 || ||||| || || || | | ||||| ||||||| ||||| || || | Sbjct 414726 AGCGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCA 414785 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACA 57861 || || ||| | || || || | || || || |||||||| || ||||| ||||| Sbjct 414786 TGATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACCTACGTCAAGGAGC 414845 Query 57862 ACGACGAGAAACGTAG---ACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAG 57917 || | || || || || |||||||| || || || || || || ||| |||| Sbjct 414846 ACAGCCAG---CGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCG-CAAG 414901 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGG 57974 ||||| || ||| | ||||| ||||| | | || || | | || ||| || | Sbjct 414902 AAGGCCGACTGGGCCATCAAGTGGATTCA---GGACAAGGACTCTTCCTTTGCCCAGCGT 414958 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || || || ||||| || ||||| ||||| || |||||| | || || Sbjct 414959 CTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTC 415018 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| | || || ||||| |||||||| || ||||||| | || || || Sbjct 415019 TGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGT 415078 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-C 58153 || |||||||| || || || ||||| ||||| | |||||||| | || || | | Sbjct 415079 GATGAGGGTCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCAC---CTGAAGAACCGC 415135 Query 58154 GAC-GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 | | || ||| ||| || || ||||| || || ||| ||||| | ||||| Sbjct 415136 GCCAGCAAGGAGATTATCCGTGAGATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTC 415195 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 | ||||| || || || || |||| || |||||| ||||| ||||| Sbjct 415196 TTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACGCTGATGAAGCAGTAC 415255 Query 58272 ATTGAGTTTGTTGCCGA 58288 ||||||||||| ||||| Sbjct 415256 ATTGAGTTTGTCGCCGA 415272 >seq24 Length=472585 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || ||||| |||| || || | || Sbjct 84286 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTGGAGTCTTC 84345 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 84346 CGACACTATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 84405 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| || | || || ||| || ||| || || Sbjct 84406 GCAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 84465 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 84466 CATCCAGAAGGAGTCTACCCTCCACCTGGTCCT 84498 Score = 104 bits (114), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 31183 TGAATCAAACATGCAAATTT---TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGA 31239 ||| || || ||||| ||| |||| ||||| || || ||||| || ||||| |||| Sbjct 84561 TGATTCTAATATGCA--TTTCAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGA 84618 Query 31240 CGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGT 31299 || || | ||||| | | || | ||||| | || ||||||||| || | Sbjct 84619 GGTCGAGTCATCCGATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTAT 84678 Query 31300 GCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTAT 31359 || ||||||||||||||||| || || ||||| || ||| | || ||| | || | Sbjct 84679 CCCTCCCGACCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACCCT 84738 Query 31360 GAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| ||||| || || || || ||||| || ||||| ||| | || | || || Sbjct 84739 GAGCGATTACAACATCCAGAAGGAGTCTACTCTCCACCTGGTCCTTCGTCTTCGTGGTGG 84798 Query 31420 TA 31421 || Sbjct 84799 TA 84800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || ||||| | || || || | || Sbjct 84800 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACACTAGAAGTGGAGTCATCT 84859 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | ||||||||| ||| | || || ||||| Sbjct 84860 GATACCATCGACAACGTCAAGTCAAAGATTCA-GGACAAGGAGGGCATTCCCCCTGACCA 84918 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || |||||||| || ||| |||||||| | || ||||||| || || Sbjct 84919 GCAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 84978 Query 31372 CATTCAAAAAGA 31383 ||| || || || Sbjct 84979 CATCCAGAAGGA 84990 >seq25 Length=464062 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 387718 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 387777 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 387778 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 387837 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || || ||||| || ||| | || || || ||||||| || Sbjct 387838 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 387897 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 387898 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 387948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764277037520