Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9 156 8e-33 seq3 152 1e-31 >seq9 Length=716796 Score = 156 bits (172), Expect = 8e-33 Identities = 431/656 (66%), Gaps = 10/656 (2%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| || ||||| |||||| ||||| |||| ||||| || |||||||||| | ||| Sbjct 53518 ACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCGAATTCTTCGCCATAGCAGTC 53459 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---A 94507 | |||||||||||| |||| |||||||||| | ||| | || || |||| | Sbjct 53458 AGCAAGGCCAGGGCATTCGTTAGGGCACATCAAAGTCCAGT----CCAAGTTCTTCTCAA 53403 Query 94508 CTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAAT 94567 | | || |||||| ||||||| | ||||| ||| |||| || || | | | | | Sbjct 53402 CACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCT 53343 Query 94568 CTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAG 94627 |||| || ||| ||||| | | ||||| || || || || |||||| Sbjct 53342 CTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGCT 53283 Query 94628 AAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAG 94687 | |||||||| ||||| | ||||| || |||||| || | | | ||| Sbjct 53282 CGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAG 53223 Query 94688 AGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGA-A 94746 | ||| |||| | | || | | |||| ||| | |||||| | || || | Sbjct 53222 TGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGG-TGCCGGCA 53164 Query 94747 ATGGGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTG 94806 ||| || | || | | | || | || | ||||| || ||||| ||||| Sbjct 53163 ATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTG 53104 Query 94807 GAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGG 94866 || || || || ||| | ||| || || |||||||||||||| || || | | | Sbjct 53103 GAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATG 53044 Query 94867 CCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGG 94926 ||| |||||||| ||||| || || | | || ||| || || || |||||| Sbjct 53043 TCCACCAGGAAGCATGAGGACAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGAGTGGGG 52984 Query 94927 GAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATG 94986 || ||||||||||| | | || |||||||| | ||||| |||| |||| | ||| Sbjct 52983 GAGGCATGGGTAAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATG 52924 Query 94987 TCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 | ||| || ||| |||||||||||||||||||||| ||| || |||||||| Sbjct 52923 TTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAAC 52868 >seq3 Length=984773 Score = 152 bits (168), Expect = 1e-31 Identities = 300/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || |||||||| || || || || || ||||| |||||| Sbjct 414962 GTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGG 415021 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| || ||| | ||||||| || |||| |||||| ||| | || ||| | || Sbjct 415022 CTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGAT 415081 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || ||||||||| ||| |||| | || || ||| Sbjct 415082 GAGGGTCTGCACACCGACTTTGCTTGCCTGCT----CCACTCTCACCTGAAGA-ACCGCG 415136 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| || | || | ||| || ||||||| |||||| |||| || || || || Sbjct 415137 CCAGCAAG-GAGATTATCCGTGAGATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTC 415195 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | || || | | |||| |||||| || | |||||| |||||| Sbjct 415196 TTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACGCTGATGAAGCAGTAC 415255 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 ||||| ||||| || ||| || | || | | || || ||| ||| || Sbjct 415256 ATTGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCAACGAGAAGATCTACAAGTCC 415315 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 ||||||||||| |||||||| || || ||||| | ||||||||||| || || Sbjct 415316 TCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAG 415375 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | || | ||||||||| Sbjct 415376 AAGCGCGTTGGCGAGTATCA 415395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579169283855