Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-33 >seq3 Length=984773 Score = 158 bits (174), Expect = 2e-33 Identities = 372/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| |||||||||||| || | | |||| ||||| || || || || Sbjct 415107 CAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGG 415048 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || | ||| || ||||| || ||||| || || | |||| |||||| Sbjct 415047 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAG 414988 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33758 || || || || ||||||||||||| || | || || || | | |||| || Sbjct 414987 ATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGA 414928 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 414927 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 414868 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| ||| | | | || || || || || ||||| | ||| || | Sbjct 414867 AAGAGGTAGCTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTC 414808 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 414807 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | || || || | | || || || || || || || ||| ||| Sbjct 414747 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCA 414688 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 34054 || || |||| | || || || || || ||||| | || | | | || ||||| Sbjct 414687 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 414629 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | | ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 414628 GTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 414569 Query 34115 TTTATACATATTCCAGAT 34132 ||| ||||| | |||||| Sbjct 414568 TTTGTACATTTGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814600493680