Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq25 104 2e-17 seq24 96.9 3e-15 >seq25 Length=464062 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||||||| |||| Sbjct 387935 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 387876 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| ||||||||| |||||| || ||||| || || || ||||| || ||| Sbjct 387875 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 387816 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | | Sbjct 387815 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 387756 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 387755 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 >seq24 Length=472585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | || ||||| | || ||| || || ||||| || ||| Sbjct 85029 TGGCCACCACGCAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 84970 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| |||||| ||||| |||||||| |||| || || ||||| || || Sbjct 84969 CTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGG 84910 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | |||| || | | || | || || | | ||| Sbjct 84909 GGAATGCCCTCCTTGTCC-TGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTC 84851 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| || | || | |||||||||||||| || || || || || |||||| Sbjct 84850 CACTTCTAGTGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 84799 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || ||| || || | || ||||| || || ||| Sbjct 84483 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 84424 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || ||||| ||||| || ||||| ||| | || | || Sbjct 84423 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTT 84365 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||||||||| | || | ||||||||||| | || Sbjct 84364 CACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTCTTGCCGGTGAGGGT 84305 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 84304 CTTGACGAAGATTTGCAT 84287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061637495200