Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 154 2e-32 >seq3 Length=984773 Score = 154 bits (170), Expect = 2e-32 Identities = 370/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| |||||||||||| || | | ||||| |||||||| || || || Sbjct 415107 CAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGG 415048 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || | ||| || ||||| || ||||| ||||| | || |||||| Sbjct 415047 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAG 414988 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGT 50136 || || || || || ||||||||||| || | || || || | | |||| || Sbjct 414987 ATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGA 414928 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 414927 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 414868 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| ||| | | | || || || || || ||||| | ||| || | Sbjct 414867 AAGAGGTAGCTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTC 414808 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 414807 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | || || || | | || || || || || ||||| ||| ||| Sbjct 414747 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCA 414688 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAA 50433 || || |||| | || || || | || |||| | | | | || ||||| Sbjct 414687 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 414628 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | ||| || || | ||| | || || | ||||| || || ||||| |||||| Sbjct 414627 TCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTT 414568 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 414567 TTGTACATTTGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265379244840