Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 149 8e-31 >seq3 Length=984773 Score = 149 bits (164), Expect = 8e-31 Identities = 369/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||||||||||||||| | | |||| |||||||| || || || Sbjct 415107 CAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGG 415048 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || | ||| || ||||| || || || ||||| | ||| |||||| Sbjct 415047 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAG 414988 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGT 42241 || || || || || |||||||||| || | || || || | | |||| || Sbjct 414987 ATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGA 414928 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 414927 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 414868 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| ||| | | | || || || || || ||||| | ||| || | Sbjct 414867 AAGAGGTAGCTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTC 414808 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| ||||||| | | Sbjct 414807 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | || || || | | || ||||| || || ||||| ||| ||| Sbjct 414747 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCA 414688 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCA 42537 || || |||| | || || || || || |||| | ||| | || ||||| Sbjct 414687 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCA 414629 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | | ||| || || | ||| | || || | ||||| || || || || ||||| Sbjct 414628 GTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 414569 Query 42598 TTTATACATATTCCAGAT 42615 ||| ||||| | |||||| Sbjct 414568 TTTGTACATTTGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136003699560