Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 233 3e-56 seq9 123 4e-23 seq133 93.3 6e-14 >seq3 Length=984773 Score = 233 bits (258), Expect = 3e-56 Identities = 579/864 (67%), Gaps = 35/864 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| ||||| ||||| | ||| ||| | |||||| Sbjct 414551 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 414610 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| |||| | || || Sbjct 414611 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 414666 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||| | |||||| || || |||||||| || ||| | Sbjct 414667 CTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGA 414726 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 414727 GCGTTTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGTTTCCAGATCA 414785 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | |||||| || || |||| ||| | | | Sbjct 414786 TGATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACCTACGT---CAAGG 414842 Query 125314 CGCAACGTAAACACA---TGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 ||| | | | || ||||| ||||| || || || | || | || || || | Sbjct 414843 AGCACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 414902 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || |||||| | ||| | | ||||| | ||| | | || | Sbjct 414903 AGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCG 414962 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||| ||||| |||||||| || ||||| ||||||| |||| Sbjct 414963 TTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGC 415022 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||| | || |||||||| || ||||| | |||||| | || ||||| || | Sbjct 415023 TCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGATG 415082 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609 |||| || ||| |||||||| | ||| | | ||| || || | || | Sbjct 415083 AGGGTCTGCACACCGACTTTGC---TTGCCTG---CTCCACTCTC----ACCTGAAGAAC 415132 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 | ||||| | || | || | || | || |||||||| || || || || ||| Sbjct 415133 CGCGCCAGCAAGGAGATTATCCGTGAGATCATCACTGATGCCGTCAGAATCGAGCAGGAG 415192 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 || | ||||| | || || | || || | ||||||||| || ||| ||| | Sbjct 415193 TTCTTGACCGAGGCTCT-CCCCTGTGCTCTGCTGGGCATGAACGCCACGCTGATGAAGCA 415251 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTA 125785 |||||| |||||||| || |||||||| || || | ||| || ||||| || Sbjct 415252 GTACATTGAGTTTGTCGCCGATCGTCTGCT---CGTCGCTCTCGGCAACGAGAAGATCTA 415308 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 ||| || || ||||| || |||||| | ||| || || | || ||||||||||| Sbjct 415309 CAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTT 415368 Query 125846 TTTCGAGAAGAAGGTCAGCGAGTA 125869 ||||||||| || ||||||| Sbjct 415369 CTTCGAGAAGCGCGTTGGCGAGTA 415392 >seq9 Length=716796 Score = 123 bits (136), Expect = 4e-23 Identities = 316/474 (67%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| ||||| || || || || || | ||| ||||| | || |||| Sbjct 53229 GATACGTCGACCAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCCATCTACCTCGAGCCTT 53288 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || |||||||| || | || | ||||| ||| ||| ||||||| | Sbjct 53289 GGCACGCTGATGTTTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 53348 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042 | ||| | ||| |||| || |||||| | || ||| ||||||||||||| || | Sbjct 53349 GTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGA 53408 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || ||| |||||| | |||||||| || | || || || | || |||| Sbjct 53409 AGAACTTGG--ACTGGACTTTGATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTGCTA 53466 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAG-AGGGCCGATACGTGAGAC 97161 |||||||| || ||||| ||| | || ||| | | ||| | || |||| Sbjct 53467 TGGCGAAGAATTCGAGGCGCTGTATGAGAAGTATGAGAAGGAAGGAAAGGGTCGCAAGAC 53526 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| || | |||| |||||| | | ||| | ||| ||| |||||||| | Sbjct 53527 TATCCGA-GCTC-AGAAGCTGTGGTACTCTATCCTAGAGGCCCAGACTGAGACTGGCAAC 53584 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| || ||||||||| | || || || |||||||| || |||| ||| Sbjct 53585 CCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGAACC 53644 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||| ||||||| || ||||| || || | |||||| | | || |||||| Sbjct 53645 ATCCGCAGCTCCAACCTCTGCACCGAGATCATTGAGTACTCTGCCCCTGACGAG 53698 >seq133 Length=44178 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| || |||| ||| |||| ||| |||| || ||||||| | |||| ||| Sbjct 39205 TCAATGTACTCGACGACGCGCTCAAAGTCCTTCTCTCCGAAACCACGGCTGGTCATGGCA 39146 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||| | || ||| |||| || | |||||||||||||||||||| | | || Sbjct 39145 GGGGTACCAATTCGGATACCGCAAGGAGTCAGAGCGCTCTTGTCTCCGGGAATGGCATTC 39086 Query 126802 TTGTTGCAAGCGAT 126815 |||||||| || || Sbjct 39085 TTGTTGCAGGCAAT 39072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055670705560