Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq16 93.3 4e-14 >seq16 Length=566209 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 5593 CAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAG 5652 |||||| || | ||||||||| ||||| ||| | ||| || || |||||| || Sbjct 43105 CAGCTGAGCAACCCGGTCGCCCTCCTTTATCTCATAGTCGGCGTCTGCGTGGTTGAAGAG 43046 Query 5653 CACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAA 5712 | || ||| ||||||||||| ||||| || ||||| ||||| |||||||| Sbjct 43045 GAGAACCTTGACGGGCCCGCGGTAGTCTGCGTCGATGACGCCGGCGCCGGTATCGATGAA 42986 Query 5713 GTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 ||||||| || ||||| ||||||||||| | ||||||| Sbjct 42985 GTGCTTGGAGGCGAGGCCCGAGCGGGGAGCAATTCGGCCGT 42945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430052403069272