Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq43 107 3e-19 seq3 107 3e-19 >seq43 Length=319320 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 272841 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 272783 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 || ||||| |||||||||||||| ||||||||| |||||| Sbjct 272782 TCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 272742 Score = 93.3 bits (102), Expect = 7e-15 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| | ||| ||||||| || || |||| ||| | Sbjct 272658 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 272599 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| |||| ||||||||| Sbjct 272598 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTGGACGTCGTCTATG 272539 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 272538 CTCTCAAGCGACAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 272495 >seq3 Length=984773 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 59770 GCCAAGCGTCACCGTAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 59828 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 59829 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 59869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074851649033