Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 170 2e-37 seq9 143 3e-29 >seq3 Length=984773 Score = 170 bits (188), Expect = 2e-37 Identities = 375/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| |||||||||||| || | | ||||| |||||||| || || || Sbjct 415107 CAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGG 415048 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || | ||| || ||||| || ||||| || || | ||| |||||| Sbjct 415047 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAG 414988 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33480 || || || || ||||||||||||| || | || || || | | |||| || Sbjct 414987 ATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTTGTCCTGA 414928 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 414927 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 414868 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| ||| | | | || || || || || ||||| | ||| || | Sbjct 414867 AAGAGGTAGCTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTC 414808 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 414807 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 414748 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | || || || ||| || || || || || ||||| ||| ||| Sbjct 414747 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCA 414688 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 33776 || || |||| | || || || || || ||||| | || | | | || ||||| Sbjct 414687 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 414629 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | | ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 414628 GTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 414569 Query 33837 TTTATACATGTTCCAGAT 33854 ||| ||||| | |||||| Sbjct 414568 TTTGTACATTTGCCAGAT 414551 >seq9 Length=716796 Score = 143 bits (158), Expect = 3e-29 Identities = 447/692 (65%), Gaps = 0/692 (0%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| ||||| | || |||||||| | ||| || || | || || || ||||| Sbjct 53451 CCAGGGCATTCGTTAGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 53392 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || |||||||| ||||| ||||| | || || || | || | || || || || Sbjct 53391 AACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCG 53332 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | || ||||| ||||| || || | ||| ||| Sbjct 53331 TGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATG 53272 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | ||||||| || ||||| || ||||| || | |||||| || ||||| || | Sbjct 53271 GCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAG 53212 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 |||| | ||| || || |||||||| || |||| ||||| |||| || || || Sbjct 53211 ACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCC 53152 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 ||||||| ||| | || || || || || ||||| || || || | || Sbjct 53151 GTGGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCA 53092 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 ||| || || ||||| ||||||||||| ||||| || || |||||| | || || Sbjct 53091 CATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAG 53032 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || |||| || | || || || || || | || || || || || ||| Sbjct 53031 CATGAGGACAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGGGTA 52972 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707 || | || || | || | ||| ||||||| | || || | | | Sbjct 52971 AAGAACTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAA 52912 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 | || || || |||||||| | ||||||||| |||| ||||| |||||| | | | Sbjct 52911 ACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGT 52852 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827 |||| | || ||| |||| || || || || || || | ||| |||||||| Sbjct 52851 TTCAGGAGATATGATCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGG 52792 Query 63828 TCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||||| | ||| | |||| || | ||||| Sbjct 52791 TCGTAGACAATGGCAGAGTCAAGCTCTTCCTT 52760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944233213960