Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9 315 2e-80 seq1 96.9 9e-15 seq3 86.0 2e-11 >seq9 Length=716796 Score = 315 bits (348), Expect = 2e-80 Identities = 1067/1641 (65%), Gaps = 56/1641 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | || || | | ||| ||||| || | | | ||| |||| || Sbjct 52970 TTTACCCATGCCTCCCCCACTCTCTTCAACGCTGGTACCCCGCAAGCTCAGCTGTCCTCA 53029 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||||| ||| |||||||||| ||||| | |||| Sbjct 53030 TGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTTTGAAGACA 53089 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | |||||||||| || || || || || | | || ||||| | | ||||| Sbjct 53090 TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTGAACG-TCCACCGTATCCGTGC 53148 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | ||||||| |||||| || ||| || || | | ||||||||||| Sbjct 53149 CACGGGCTCTTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCG 53208 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| ||||| || ||||||||||||||||| |||||| || || || Sbjct 53209 AGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGAGCCTT 53268 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 ||| || || ||||||||| || || ||| |||||||||| ||||| ||||| || || Sbjct 53269 TGCCATCTACCTCGAGCCTTGGCACGCTGATGTTTTTGAGTTCCTTGACCTCCGCAAGAA 53328 Query 363905 ACACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||||| || |||||| | ||||| ||||| |||||| || || ||| | |||| Sbjct 53329 CCACGGCAAGGAAGAGG---TCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGA 53385 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAA-TTGGTC---ACTCT--TTTGCCCACA 364016 | || |||||||| || ||| ||||| |||| | ||| | | ||||| | Sbjct 53386 TCTGTTCATGAAGCGTGTTGAG------AAGAACTTGGACTGGACTTTGATGTGCCCTAA 53439 Query 364017 CGAATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 |||||| || || ||| | || || ||| || || || | | || || || || ||| Sbjct 53440 CGAATGCCCTGGCCTTGCTGACTGCTAT--GGCGAAGAATTCGAGGCGCTGTATGAGAAG 53497 Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 ||||| ||| ||||||| ||| ||||| || | || |||||||| |||| | ||| Sbjct 53498 TATGAGAAGGAAGGAAAGGGTCGCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCTATC 53557 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 | || | |||| |||||| || | |||| ||| | ||||| ||| | |||||||| Sbjct 53558 CTAGAGGCCCAGACTGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTTGCAACCGT 53617 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTAT 364253 ||| ||||||| || |||| || || | || |||| |||||| || |||||||| || Sbjct 53618 AAGAGCAACCAGAAGAACCTGGGAACCA-TCCGCAGCTCCAACCTCTGCACCGAGATCAT 53676 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||| ||| | || || |||||| || || || ||| | || || | || || || || Sbjct 53677 TGAGTACTCTGCCCCTGACGAGGTCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGC 53736 Query 364314 GTTTGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA 364367 ||||| || || || | |||| | || | ||| | ||||| ||| | Sbjct 53737 ATTTGTCGACTATAACGAAGGCTGCTATGACTTCAAGAAGCTTCACGACGTTACCAAGGT 53796 Query 364368 TGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG 364426 | | | || ||| || | ||||| ||| || || || ||| || || || Sbjct 53797 GGTTGTCCGTAACCTCAACCGCATCATCGATGTGAACTACTACCCCGTTCAGGAGGCTCG 53856 Query 364427 ----AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482 ||| || | || || || || |||||| | ||||| ||||| || |||||| Sbjct 53857 CAACAGC-----AACAGCCGCCACCGACCCATTGGTGTCGGTGTCCAGGGTCTTGCTGAC 53911 Query 364483 GTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAG 364542 | ||| | || | | || || || || || ||||| | | || ||| | Sbjct 53912 GCTTTCCTCGCTCTGCGTCTTCCCTTCGAATCACCCGAAGCTCGCGAGTTGAACAAGCAA 53971 Query 364543 ATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAG 364602 |||||||| || || || || || | || || || | || || | | || Sbjct 53972 ATCTTTGAGACTATCTACCACGCTGCCCTTGAGGCATCCATGGAGATTGCCAAGATCGAG 54031 Query 364603 GGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTA 364662 || || | | |||| || || || | || | |||||||||| | Sbjct 54032 GGTCCCTATGAGTCATTCAAGGGATCACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTG 54091 Query 364663 TGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAA 364721 ||| | |||| ||| ||| || ||| | ||||| | || | | ||| | ||| | Sbjct 54092 TGGGACGTCAAGCCCACTGACCTCTGGGAGTGGGACTCCCTCAAGGAGCAA-ATCAAGGA 54150 Query 364722 GCATGGTACTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACA 364778 ||| |||| ||||||| | ||||| || ||||||||||| || ||| | || Sbjct 54151 GCACGGTATTCGCAACAGTTTGCTCGT---CGCCCCCATGCCCACTGCCAGCACTTCCCA 54207 Query 364779 GATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGT 364838 |||||| || ||||| || |||||||| || | || ||| | || || || || Sbjct 54208 GATCCTAGGCAACAATGAATGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGT 54267 Query 364839 TCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGG 364898 ||| | || || || | ||| || || | || ||||||||||| ||| || Sbjct 54268 CCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACTGG 54327 Query 364899 GCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT 364958 || ||| || ||||||||| ||||| || | || |||||| | |||||||| Sbjct 54328 CCTCTGGTCCGATGCTATGAAGAACCGCATCATTGCTGAGAACGGTTCTATCCAGAACAT 54387 Query 364959 TCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCG 365018 ||| |||| | || | ||| | | ||||| || || ||||| || || ||| Sbjct 54388 TCCCAACATTCCCGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATCTCTCAGCG 54447 Query 365019 AACTCTCATTG---ATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTT 365075 || ||| | | ||| | ||||| || |||||||| || ||| |||||| || Sbjct 54448 ---TCACATCGTCCAGATGTCAGCCGACCGTGGTGCTTTCATTGACCAGTCCCAGTCCTT 54504 Query 365076 TAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTG 365135 ||| | ||||| | || || | |||| | || |||||| ||| || || Sbjct 54505 GAACATTCACATGAAGGATCCCACAATGGGCAAGATCACCAGCATGCACTTCACTGGCTG 54564 Query 365136 GAAATCCGGTCTTAAGACAGG 365156 ||| ||||| ||||| || Sbjct 54565 GAAGCTTGGTCTCAAGACTGG 54585 >seq1 Length=1198811 Score = 96.9 bits (106), Expect = 9e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 111732 TGCCAAATGTATCAGCGAT-CTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||||| | |||||||||| |||| || || || || ||| ||||||| || |||||||| Sbjct 1128585 TGCCAGCTATATCAGCGATCCTGC-GACATGGGCCTCGGTATTCCGTTCAACATTGCAAG 1128643 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 |||||||| || ||| | | |||| || || | || |||||| ||| | Sbjct 1128644 CTACGCACTGCTGACTCACATGCTCGCCCACGTTTGCGACCTTGTACCGGGAACATTTAC 1128703 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGTT 111910 ||||| || ||||| || || || |||| ||||||| ||||| ||| ||||||| | Sbjct 1128704 CCACGTCATGGGAGACGCACACGTCTACATTGACCACATCGATGCTCTTCGAACACAGCT 1128763 Query 111911 GAAGCGC 111917 | ||||| Sbjct 1128764 GGAGCGC 1128770 >seq3 Length=984773 Score = 86.0 bits (94), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAA 22476 ||||||| | ||| || ||||| || ||||| | || ||||| | |||| || Sbjct 414881 ACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGAC 414940 Query 22477 CGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGA 22536 ||| || || | ||||| |||| ||||||| ||||| || || ||||| ||| Sbjct 414941 TCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGA 415000 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 || ||| | ||||| ||||| || || | | | ||||| || || || || || Sbjct 415001 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCC 415060 Query 22597 AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 || ||| |||| || ||||||||||| || ||||| ||||| || |||| Sbjct 415061 AACGAGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTGCT 415113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347237597942