Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 152 5e-32 seq25 131 2e-25 seq24 131 2e-25 seq11 95.1 1e-14 >seq3 Length=984773 Score = 152 bits (168), Expect = 5e-32 Identities = 357/527 (68%), Gaps = 25/527 (5%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGAT-CAACAGCAGCACCGC 46142 || || ||| | |||||||| |||||||||| || |||||||| || | || || Sbjct 414884 ATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCT 414943 Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202 |||| ||| ||||| | || |||||||| || ||||| |||| || || Sbjct 414944 TCCTTT-GCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGC 415002 Query 46203 TTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 |||||| ||||||| | |||| | | || ||||||| |||||||| || ||| Sbjct 415003 CTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAA 415062 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACA 46321 |||||| || || || || ||||| ||||| || |||||||| || || || | || Sbjct 415063 CGAGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTGCTCC----ACT 415118 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC------ATGTTCAAGGAGG 46375 ||| | || | || ||||| | || | | | | | || ||| || | Sbjct 415119 CTCACCTGAAGAACC-----GCGCCAG-CAAGGAGATTATCCGTGAGATCATCACTGATG 415172 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | || || ||| ||||||| || || | || || ||| ||| ||||||||||||| Sbjct 415173 CCGTCAGAATCGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGA 415232 Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-T 46494 |||| | ||| | ||||| |||||||| || || || |||||||| ||| | Sbjct 415233 ACGCCACGCTGATGAAGCAGTACATTGAGTTTGTCGCCGATCGTCTGCTCGTC--GCTCT 415290 Query 46495 CACCAGCC-GAAGCATTTTCACGCGCGC-AATCCATTTGAGTTTATGAACAACATCTCCC 46552 | || | |||| || | || | | | || || || || || ||| | |||||||||| Sbjct 415291 CGGCAACGAGAAG-ATCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCC 415349 Query 46553 TGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 ||| ||||| || || || ||||| |||||||| ||||||||| || Sbjct 415350 TGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTATCAG 415396 >seq25 Length=464062 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||||| Sbjct 387947 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 387888 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| || |||||||||||||| || Sbjct 387887 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 387828 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 387827 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 387768 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 387767 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 >seq24 Length=472585 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || ||||||||||||||| Sbjct 84798 CCACCACGAAGACGAAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 84739 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||| |||||| Sbjct 84738 AGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 84679 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||||| Sbjct 84678 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACC 84619 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | ||| || || || || || || |||| Sbjct 84618 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 84582 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || || || | ||| |||||| || |||||||| ||||| Sbjct 85027 GCCACCACGCAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 84968 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || ||| |||| | ||||||||||| || || Sbjct 84967 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGG 84908 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || || || ||||| ||| | | || ||||| | || | ||||| | ||||| | Sbjct 84907 AATGCCCTCCTTGTC-CTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCA 84849 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | ||| || || || |||||||| Sbjct 84848 CTTCTAGTGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| | Sbjct 84513 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 84454 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| ||| |||| | |||||||||||| ||||| Sbjct 84453 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 84394 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||| |||| ||||| | Sbjct 84393 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 84334 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || ||||| || || || ||||| || |||||| Sbjct 84333 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 84286 >seq11 Length=641957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||| || ||||| ||||||||||| ||| ||| Sbjct 26541 CCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 26482 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||| ||||| || ||||| || ||||| ||| || ||||| | | Sbjct 26481 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 26422 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 26421 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 26362 Query 131225 AA 131226 || Sbjct 26361 AA 26360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010552039040