Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3 132 3e-26 seq24 86.0 4e-12 >seq3 Length=984773 Score = 132 bits (146), Expect = 3e-26 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || |||||||||||||| ||| ||||||| ||||| | || || ||||| ||| Sbjct 608204 GATGCCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATTGAAGGCAAGGGTAAC 608145 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || ||||| | |||||| || | |||||| || | || | ||||||| Sbjct 608144 GGTATCAAGACCGTTGTCGTCAACTTGTCCAGCGTCGCTCAGTCTCTTGCTCGCCCTGGT 608085 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 |||| | || || || || | ||| ||||| |||||||| | |||| | ||| Sbjct 608084 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTTGGTGCTCAGACCAACATTGACCCCAAG 608025 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| | || | ||||||||||||||||| || || Sbjct 608024 GACGACCGTTGGATCATCAACGGCGCCCACGATGCTGCCAAGCTGCAGGACCATCTCGAT 607965 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || ||| || || || || | ||||| | ||||| |||||||| Sbjct 607964 GGCTTCATCAACAAATTCGTCCTCTGCAAGAAATGCAAGAACCCTGAGACCGA 607912 >seq24 Length=472585 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| || || ||||||||||| || || ||||| || | Sbjct 85026 CCACCACGCAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 84967 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || || || || ||||| || || || | ||| Sbjct 84966 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGA 84907 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||| || || | || ||||| || ||| Sbjct 84906 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACT 84847 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||| || || || || ||||| || || || || |||||||| Sbjct 84846 TCTAGTGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945644693611