Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq24 129 5e-25 >seq24 Length=472585 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || |||||||| | ||||||||||| ||| Sbjct 84800 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACACTAGAAGTGGAGTCATCT 84859 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| |||| | ||| ||||| || || ||||| |||||||| Sbjct 84860 GATACCATCGACAACGTCAAGTCAAAGATTCA-GGACAAGGAGGGCATTCCCCCTGACCA 84918 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || || || || || | ||||| | |||||| || |||| ||||| Sbjct 84919 GCAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 84978 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || || || || Sbjct 84979 CATCCAGAAGGAGAGCACCCTGCACTTGGTCCT 85011 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || ||||| | ||||| || ||||||| |||| |||||||| Sbjct 84284 ACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTGGAGTCT 84343 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||||||||| ||||| | || | ||| ||||| || || ||||| ||||| Sbjct 84344 TCCGACACTATCGACAATGTGAAGTCCAAGATTCA-GGACAAGGAGGGCATTCCTCCTGA 84402 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || ||||| ||| | || |||| || ||| || ||| || Sbjct 84403 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTA 84462 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || || Sbjct 84463 CAACATCCAGAAGGAGTCTACCCTCCA 84489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325987868515