Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23]
381 sequences; 37,970,415 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3 183 3e-41
>seq3
Length=984773
Score = 183 bits (202), Expect = 3e-41
Identities = 485/729 (67%), Gaps = 15/729 (2%)
Strand=Plus/Minus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
||| || ||||| || |||||||| ||||| ||||| || || ||| | ||
Sbjct 415273 ATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGA-GCAC 415215
Query 92986 AGGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
||| ||||| ||||||||||| || | ||||||| ||||| || | | ||| ||
Sbjct 415214 AGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATCTCAC 415155
Query 93045 T--TACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101
|| ||| || ||| | | || | | | | | | | || ||| |||||||
Sbjct 415154 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAG---GCAAGCAAAGT 415098
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
|||| || | ||| || || || || || | ||| ||| ||| || | || || | |
Sbjct 415097 CGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 415038
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
| |||| ||||||||||| || || || ||||| || || || ||||| || |
Sbjct 415037 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAA 414978
Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG-ATCCATTTT 93280
|||| ||||| || || | ||| | |||||| | | || | ||| ||||| ||
Sbjct 414977 CGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTT-GTCCTGAATCCACTTG 414919
Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340
| ||||| ||||| || || ||| ||||| | || || || ||||| || |||||
Sbjct 414918 ATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 414859
Query 93341 TCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
|||| | | | || | | ||| || ||||| | |||||| || | || || ||
Sbjct 414858 CTGCGCTGGCTGTGCTCCTTG-ACGTAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGTG 414800
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
|| |||||||| || ||||| |||||||| |||| ||| || | |||||| || ||
Sbjct 414799 GATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 414740
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
|| | ||| || || || || ||||| || || ||||| || ||||| || ||
Sbjct 414739 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGC 414680
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAG 93576
|| || || || || | ||||| ||||| || | | || | ||| ||| ||
Sbjct 414679 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 414620
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
||| || || ||||| | || ||| | ||||| || || || || || |||||||||||
Sbjct 414619 ATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 414560
Query 93637 ATCCCATAT 93645
| ||| ||
Sbjct 414559 TTGCCAGAT 414551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556858147950440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |