Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 183 3e-41 >seq3 Length=984773 Score = 183 bits (202), Expect = 3e-41 Identities = 485/729 (67%), Gaps = 15/729 (2%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| || |||||||| ||||| ||||| || || ||| | || Sbjct 415273 ATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGA-GCAC 415215 Query 92986 AGGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 ||| ||||| ||||||||||| || | ||||||| ||||| || | | ||| || Sbjct 415214 AGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATCTCAC 415155 Query 93045 T--TACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 || ||| || ||| | | || | | | | | | | || ||| ||||||| Sbjct 415154 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAG---GCAAGCAAAGT 415098 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 |||| || | ||| || || || || || | ||| ||| ||| || | || || | | Sbjct 415097 CGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 415038 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | |||| ||||||||||| || || || ||||| || || || ||||| || | Sbjct 415037 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAA 414978 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG-ATCCATTTT 93280 |||| ||||| || || | ||| | |||||| | | || | ||| ||||| || Sbjct 414977 CGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTCCTT-GTCCTGAATCCACTTG 414919 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| ||||| || || ||| ||||| | || || || ||||| || ||||| Sbjct 414918 ATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 414859 Query 93341 TCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 |||| | | | || | | ||| || ||||| | |||||| || | || || || Sbjct 414858 CTGCGCTGGCTGTGCTCCTTG-ACGTAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGTG 414800 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| || ||||| |||||||| |||| ||| || | |||||| || || Sbjct 414799 GATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 414740 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || | ||| || || || || ||||| || || ||||| || ||||| || || Sbjct 414739 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGC 414680 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAG 93576 || || || || || | ||||| ||||| || | | || | ||| ||| || Sbjct 414679 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 414620 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| || || ||||| | || ||| | ||||| || || || || || ||||||||||| Sbjct 414619 ATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 414560 Query 93637 ATCCCATAT 93645 | ||| || Sbjct 414559 TTGCCAGAT 414551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858147950440