Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 seq24 107 2e-18 seq11 89.7 4e-13 >seq25 Length=464062 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 387718 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 387777 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 387778 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 387837 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || | || ||||| || || ||| | |||||| ||||||| | ||| ||| Sbjct 387838 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 387897 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||||| | || | || |||| |||| || ||| Sbjct 387898 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 387948 >seq24 Length=472585 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || |||| || |||||||| | | Sbjct 84800 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACACTAGAAGTGGAGTCATCT 84859 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| ||| ||||| ||||||||||| ||||| || || || Sbjct 84860 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 84919 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || || || || ||| | || || |||||| | ||| |||||| Sbjct 84920 CAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAAC 84979 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||| | || || || | || |||| || || Sbjct 84980 ATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTGCGTGGTGG 85026 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || ||||||| || ||||| | || Sbjct 84287 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTGGAGTCTTCC 84346 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || ||||| ||||||||||| ||||| || || || Sbjct 84347 GACACTATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 84406 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| || | |||||| ||| || | ||||| |||||| Sbjct 84407 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 84466 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 84467 ATCCAGAAGGAGTCTACC 84484 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||| || || || | |||||||| | ||| | |||| Sbjct 84596 ACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGACAACGTCAAGTCC 84655 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || ||||| || || ||||| || ||||| || || Sbjct 84656 AAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATCTTTGCTGGTAAG 84715 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| |||||| | |||||||||||| || || || || || Sbjct 84716 CAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAGTCTAC 84768 >seq11 Length=641957 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 22223 AAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATA 22282 ||| ||| || || || | || || || || |||| ||||| || || || |||| | Sbjct 26356 AAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACA 26415 Query 22283 CCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAAC 22342 | | ||| || |||| || || || ||||||||||| ||||| || ||||| || | Sbjct 26416 CGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAGCAGC 26475 Query 22343 GTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTC 22402 | | || || || ||||| ||| | |||||| ||| ||| | || || |||||||| | Sbjct 26476 GATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTTTCTGACTACAACATCC 26535 Query 22403 AAAA 22406 | || Sbjct 26536 AGAA 26539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726051019265