Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq14 109 1e-18 seq5 107 4e-18 >seq14 Length=579287 Score = 109 bits (120), Expect = 1e-18 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| |||||||| ||||| ||||| || ||||||||||| ||| Sbjct 48362 TCTCTGGGCTCTCGTATTGCCGTCATTGGCCCCAACGGTGCTGGAAAGTCTACCCTGATC 48421 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACAT 280270 || || || ||| ||| | |||||| | ||| | | | |||| ||||| Sbjct 48422 AACGTGCTCTGTGGTGAGCTCATCCCCACTG-GTGGTGAGATCTACCAGCACGAGAACAT 48480 Query 280271 GCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGAC 280330 || || || ||| || |||||||||||| |||||| || |||||| |||||| ||| Sbjct 48481 CCGTATCGCCTACATCAAGCAGCACGCTTTCGCCCACATTGATAACCACTTGGACAAGAC 48540 Query 280331 TCCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATC 280389 |||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| | Sbjct 48541 TCCTTCCGAGTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACCATGGACC 48599 Query 280390 G 280390 | Sbjct 48600 G 48600 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| ||||| ||||| || |||| ||||||||||| ||| Sbjct 47555 GGCGAGGACCTTTGCAACTGCACATTCTCTCTCGCCTACGGTGCCAAGATTCTGCTTAAC 47614 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| |||||||||| | || || ||||| ||||||||| || | Sbjct 47615 CAGACCCACCTGCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 47674 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 47675 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 47733 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 || || | ||| || | || ||||||||| |||||||| || Sbjct 47734 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGACCTCGACTCCGCT 47779 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 |||||||||| || || ||||| || || || ||| ||||| |||| | | || Sbjct 48957 CTCACTCTCGTATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGACTGTCTTGGCTGCTT 49016 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 49017 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 49075 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 49076 GACTCTCTGGGTGCTCTG 49093 >seq5 Length=833221 Score = 107 bits (118), Expect = 4e-18 Identities = 430/670 (64%), Gaps = 13/670 (2%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || |||||||||||||||||||| || | | || ||||| || | Sbjct 220708 GTCGGCTCGCTCTCTGGTGGTTGGAAGATGAAGCTCGCTTTGGCCCGAGCCATGCTGAAG 220767 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| || | || || || || |||||| |||| | ||| | ||| Sbjct 220768 GGTGCCGATGTCCTCTTGTTGGACGAACCTACTAACCACTTGGATGTTGCAAACATTGCC 220827 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | ||| || | | | | | | | || || || |||||| Sbjct 220828 TGGCTTGAAAACTATCTCAAGACACACCCCGACATCACCAGTTTGATCGTGTCCCACGAC 220887 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 ||||||||||| || ||| | ||| |||| || ||||||| || ||||||| Sbjct 220888 TCTGGCTTCCTGGACAACGTCACCACTGACATCTACCATTATGAGCCCAACAAGAAGCTC 220947 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995 | ||| |||||||| | || || || | | ||||||||||| |||| Sbjct 220948 GCTTGTTACAAGGGCAACCTTGCAGCCTTTGTTGAACTTCGCCCTGAGGCTAAGAGCTAC 221007 Query 279996 TATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG-GG 280054 || ||| || ||| || | ||| |||||||| || || | ||| || || Sbjct 221008 TACACCCTCTCGGCATCCAACGTCCAGTTCAAATTCCCTCCCCCTGG-TATCTTGACTGG 221066 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 |||| || || || || ||||| | | ||||||||| | || ||||| Sbjct 221067 TATCAAGTCTCAGACCCGTGCCATCATCCGTATGAGCAACGTCTCCTTCACCTACCCCAA 221126 Query 280115 TGGCCCCAACATCTTCA--GCA----GTGTCAA-CTCGCAGGTTTCTATGAACTCACGGA 280167 | ||||| ||||| ||| || || ||| | | ||| || || || Sbjct 221127 GGCTCCCAAGC-CTTCACTGCAAGACGTCTCTTGCTCTCTG---TCTTTGTCTTCTCGAG 221182 Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 | | | ||||||||||||| ||||| || |||||||| | ||||| | || || || | Sbjct 221183 TGGCTATCATTGGACCCAACGGTGCCGGCAAGTCTACTTTGATCAAGTTACTCACCGGTG 221242 Query 280228 AGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCG 280287 ||||| | || | || ||| |||||| |||||| | || || | |||| || Sbjct 221243 AGACCATTCCTACGGTCGGCAAGGTTGAGAAGCACCCCAACCTTCGAATTGGTTACATCA 221302 Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347 |||||||| | | ||| | |||| || || || | |||||| ||||| || | | Sbjct 221303 AGCAGCACGCCCTGGAGCACGTTGAGATGCATCTTGAGAAGACTCCCAACCAGTATCTGC 221362 Query 280348 AGTGGCGCTA 280357 ||||||| || Sbjct 221363 AGTGGCGATA 221372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831782550421