Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25 170 4e-37 seq24 152 9e-32 seq3 136 7e-27 seq14 96.9 6e-15 >seq25 Length=464062 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||| Sbjct 387947 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 387888 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | || || ||||| || ||| Sbjct 387887 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 387828 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 387827 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 387768 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 387767 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 >seq24 Length=472585 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || || ||||| || |||||||| || ||||| Sbjct 84513 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 84454 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || || | || ||||| || ||| Sbjct 84453 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 84394 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| || ||||| ||||| | || || || Sbjct 84393 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 84334 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| || ||||| Sbjct 84333 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 84287 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| ||| || || ||||| || |||||||| |||||| Sbjct 84798 CCACCACGAAGACGAAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 84739 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || |||||||| || Sbjct 84738 AGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 84679 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || ||||| || | ||| || || Sbjct 84678 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACC 84619 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || |||||||||||||||| Sbjct 84618 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 84582 >seq3 Length=984773 Score = 136 bits (150), Expect = 7e-27 Identities = 556/868 (64%), Gaps = 25/868 (3%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || |||||||| ||||| || || |||||||||||||| |||||| Sbjct 415413 TTCATGACACCAGCCTTCTGATACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCG 415354 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | ||||| ||| |||||||||||| |||||||| || | ||| || Sbjct 415353 CCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTG 415294 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || || | || || || || ||||| |||||||| ||||||| | | Sbjct 415293 CCGAGAGCGACGAGCAGACGATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCG 415234 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | || ||||||| || ||| | ||| |||| ||| | ||| Sbjct 415233 TTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACG 415174 Query 10173 GCTTCCTCGACGATGCTCT----TTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGA 10228 || || || ||| ||| | | | | | || | || ||| || | || Sbjct 415173 GCATCAGTGATGAT-CTCACGGATAATCTCCTTGCTGGCGCGGTTCTTC---AGGTGAGA 415118 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | || || |||| | ||| || ||||| || || ||| | ||||||||| Sbjct 415117 GTGGAGCAGGCAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGA 415058 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||| || |||||||| || | || |||||||| |||| | || | || Sbjct 415057 GAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCC 414998 Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC 10408 | ||| | | |||||| ||| | |||| ||||| |||| || ||||| ||| Sbjct 414997 GCTGAAGAAGATACCCTCAACGGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTC 414938 Query 10409 ---GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | | || | || |||||| | |||||||| | | | ||| || ||||| Sbjct 414937 CTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTC 414878 Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAA--TAAGAGCATCAAGGAGC 10523 || || | |||||| | | | |||| | | | |||| | || | | || | |||| Sbjct 414877 AATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTGCTCCTTGACGTAGGTG--TCGATGAGC 414820 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACG 10582 || ||||| |||| ||||| | |||| | |||| || ||||||| ||| || Sbjct 414819 AGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CG 414761 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| |||| | || || || || | | ||||||||| | || ||||| Sbjct 414760 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 414701 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701 ||| | | ||||||||| | |||||||| |||||||| ||| |||||||||| Sbjct 414700 GTCGGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 414641 Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 ||| || |||||| || ||||| | || | | |||||| ||||||||| Sbjct 414640 GCGGTTGTT----CCAGTCGTGCAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGA 414585 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 | | || ||||||| |||||||| || Sbjct 414584 AGGAAGCCTCGGCCTTTTTGTACATTTG 414557 >seq14 Length=579287 Score = 96.9 bits (106), Expect = 6e-15 Identities = 661/1046 (63%), Gaps = 60/1046 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||||| |||||| ||||| ||| |||||| Sbjct 48564 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCCAAGTGGTTATCAATGTGGGCGAAAGCG 48505 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || | ||| || Sbjct 48504 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCACCAGTGGGG 48445 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || || ||| || ||||| || |||| ||| || ||||| ||||||||||| Sbjct 48444 ATGAGC-TCACCACAGAGCACGTTGATCAGGGTAGACTTTCCAGCACCGTTGGGGCCAAT 48386 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG--- 225216 ||| |||| || || || | ||| || | | | ||||| ||| || Sbjct 48385 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGCTGATTTCGCTGA---TCTGGGGCTT 48329 Query 225217 GCCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTT-CATGATGGCACGGTCCTTGG 225272 | ||| |||| |||| || | | ||| || |||||| | |||||| Sbjct 48328 GGAAGTACCGGGGTACTGGAAGGACAT-CTTGGTAGCACGCAGGATGGCCTTGGCCTTGG 48270 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCA 225332 | | |||||| ||||| |||||||||||||| ||| | || | | | | | Sbjct 48269 TCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCAGAGGCACCAA 48210 Query 225333 GGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 | |||||||| || || || ||||| ||||| | |||||| || Sbjct 48209 GCTCGTAGTAGGACTTGGCAGAAGGAACACGCTTG---ACGAATTCCTTCAGGTTACCAC 48153 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | ||||||| | || |||| ||||| || ||| | ||| || |||| Sbjct 48152 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGAACGATGTGCTG-GCAGACGTTGTCA 48097 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA---G 225504 ||||||| |||||||| || || |||||||| | || | | || || | | Sbjct 48096 AGGAAGCTTGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GAGAG----TTAACAAG 48044 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || ||||||| ||||| | ||||||| |||||| ||||| ||||| ||||| Sbjct 48043 GTATTCCTCGAGCCATTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTCAAGAAG 47984 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||||| |||| | || || || || |||| |||||||| ||||| || || Sbjct 47983 CAGGATATCAGGGGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCAACCACC 47924 Query 225625 GGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC---CAGGAG 225681 || || | | ||| | | | | | ||| |||||| |||| |||| | Sbjct 47923 AGAAAGAGCGGAGATCTCACCCTGGACCATCTGCTCGGTGAAGCCGAACTCGTCCAGGCG 47864 Query 225682 CGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA---- 225737 | ||| || | | || ||||| | | || |||| || | | || Sbjct 47863 CTTCTCGACA-TCAGCCTTGGAGACAT--------CGACCTTGGCCTCAGCC-AGCTTCT 47814 Query 225738 ----GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGT 225791 ||| | ||| |||||| || | ||| | ||| | |||||| || ||| Sbjct 47813 TCATGGTCCACTCAATGGTGGTCATCTCAGTATCAGCGGAGTCGAGGTCGTGCTCAACGA 47754 Query 225792 ACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCA 225850 | || ||| || | | || | |||||| ||||| | ||| | || || ||| Sbjct 47753 AGACAGTCTTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCA 47695 Query 225851 CGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGC 225910 || | || ||| |||||| | |||||||||||| || |||||| | | || ||| Sbjct 47694 CGCATGAGAGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGC 47635 Query 225911 TTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCG 225970 |||| ||| | || ||| || || |||||| |||| ||||| || ||||| | Sbjct 47634 TTGAGACGCAGGTGGGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCGAGAGAGAATGTG 47575 Query 225971 CAATCGCACAGGTCCTCACCCTCCTC 225996 || | ||| |||||||| |||||||| Sbjct 47574 CAGTTGCAAAGGTCCTCGCCCTCCTC 47549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618010773320