Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq24 107 2e-18 seq25 100 2e-16 >seq24 Length=472585 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||| ||| Sbjct 84516 ATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 84457 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || ||||| || |||||| |||| |||||||| ||||| ||| Sbjct 84456 GACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGA 84397 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | ||||||| || || Sbjct 84396 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCC 84337 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || || | || | || |||||||| || || || || || || ||||||| Sbjct 84336 ACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGG 84285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||||||| Sbjct 84801 ATACCACCACGAAGACGAAGGACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCG 84742 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| || || || || |||||||| ||||||||||||| ||||| ||| Sbjct 84741 CTCAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGA 84682 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| ||| |||| || ||| Sbjct 84681 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCG 84622 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | || | || ||||| || || || || || Sbjct 84621 ACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 84584 >seq25 Length=464062 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || | || | || || || || || |||||||| ||||| Sbjct 387948 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 387889 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||| || || || |||||||| |||| | ||||| |||||||| || Sbjct 387888 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGG 387829 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| ||||| || | | || | |||||||| || || || Sbjct 387828 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 387769 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || || || || || || || ||||||||||| Sbjct 387768 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132449132172