Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 370 2e-97 seq9 327 2e-84 >seq3 Length=984773 Score = 370 bits (410), Expect = 2e-97 Identities = 608/863 (70%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || ||| ||||||||||||||||||||| ||| Sbjct 414551 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 414610 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 414611 TCCAAGGATCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 414669 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| || ||||| |||||||| ||||| |||||||||| | | Sbjct 414670 TCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 414729 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || ||||||||||| |||||||| || Sbjct 414730 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 414789 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| |||| ||| || ||| | Sbjct 414790 GGAGAACATCCACTCCGAGACCTACTC---TCTGCTCATCGACACCTACGTCAAGGAGCA 414846 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 414847 CAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 414906 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| |||| ||||| || ||| | | || | | || | || || || Sbjct 414907 CGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTGC 414966 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 |||| | ||||| ||||| ||||||||| || ||||| |||||||||||||||||||| Sbjct 414967 CTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 415026 Query 42773 GCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | ||| |||| || ||||| || || |||||||| ||||| || ||| | || |||| Sbjct 415027 GAAGAGAGGTCTC-ATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGATGAGG 415085 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | ||||| | |||||||| ||||| || ||| ||||| | | || || | Sbjct 415086 GTCTGCACACCGACTTTGCTTGCCTGCTCCACTC---TCACCTGAAGAACCGCGCCAGCA 415142 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||||| |||| | |||||||| || ||||| |||||| |||||||| | || Sbjct 415143 AGGAGATTATCCGTGAGATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACCG 415202 Query 42952 AGTCGCTGCCC-GTGTCCCTGGTCGGCATGAA--CCACGACCTCATGTGCAAGTACATCC 43008 || | || ||| ||| | ||| | |||||||| ||||| || ||| ||||||| Sbjct 415203 AGGCTCTCCCCTGTG-CTCTGCTGGGCATGAACGCCACG--CTGATGAAGCAGTACATTG 415259 Query 43009 AGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACA 43062 ||| |||||||| | ||| || | | |||| || || ||||||| Sbjct 415260 AGTTTGTCGCCGATCGTCTGCT------CGTCGCTCTCGGCAACGAGAAGATCTACAAGT 415313 Query 43063 CGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCG 43122 | | |||||||||||| |||||||||||||| ||| |||||||||||||| |||| Sbjct 415314 CCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCG 415373 Query 43123 AGAAGCGCGTCGCCGACTACCAG 43145 |||||||||| | ||| || ||| Sbjct 415374 AGAAGCGCGTTGGCGAGTATCAG 415396 >seq9 Length=716796 Score = 327 bits (362), Expect = 2e-84 Identities = 1137/1761 (65%), Gaps = 55/1761 (3%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| ||||| | ||||||| ||| | |||||||||||||| |||||||| | Sbjct 54632 TGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGTAGGTAGTACATGCCAGTCTTGAGAC 54573 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| | || ||||||| || | ||| ||| || || || | Sbjct 54572 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATTGTG------GGATCCT 54519 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 | | ||| | || | ||||||| |||||| | ||| | | || || || | Sbjct 54518 TCATGT---GAATG---TTCAAGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCTG 54465 Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 ||| || || || |||||| ||||| | | |||||||| | || ||||| || Sbjct 54464 ACATCTGGACGATGTGACGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGT 54405 Query 243981 GCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 |||| || | || ||||||| | || || || | | |||| || | | Sbjct 54404 CGGCGGG-AATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTC 54346 Query 244040 ATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCA 244094 || |||| ||| ||||| | || | || ||| || ||||| | || | Sbjct 54345 ATAGCATCGGACCAGAGGCCAGTATCGA-CAAGATCCTTGAGAAGCCAGGGG----TTGA 54291 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | ||||| ||||| || | || || || |||||||||| |||| | || ||||||| Sbjct 54290 CAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGA 54231 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || || ||||||| || ||||| | ||||| ||||| |||||||| | || |||| Sbjct 54230 AGCATTCATTGTTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCA 54171 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 |||||| | | |||||| || ||| | |||| || ||| ||||| Sbjct 54170 AACTGTTGCGAATACCGTGCTCCTTGATTTGCTCCTTGAGGGAGTCCCACTCCCA----- 54116 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 |||||| | | |||| | |||||| ||||||||| || | || | | || | Sbjct 54115 ----GAGGTCAGTGGGCTTGACGTCCCACAAGTCAAACTGGAGAATGCCTT--CAGAGGC 54062 Query 244335 GGCTG--CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTC 244392 || || |||| | | | | |||||||| ||| || ||| | || | | || Sbjct 54061 GGGTGATCCCTTGAATGACTCATAGGGACCCTCGATCTTGGCAATCTCCATGGATGCCTC 54002 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA 244452 ||||| |||| |||||| ||||| ||||| |||||||| ||||| || | | | Sbjct 54001 AAGGGCAGCGTGGTAGATAGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGA 53942 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 |||||| | | || | ||| |||| || || ||||| || |||| || || Sbjct 53941 TTCGAAGGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGGACACCGACACCAAT 53882 Query 244513 GGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 ||||| ||| || ||||| | || || | |||||||| |||| | ||||| Sbjct 53881 GGGTCGGTGGCGGCTGTTGCTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGAT 53822 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | ||||||||| ||| | || | |||||| ||| || ||||| || Sbjct 53821 GATGCGGTTGAGGTTACGGACAACCACCTTGGTAACGTCGTGAAGCTTCTTGAAGTCATA 53762 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTGGCCA 244691 | | ||| | || || || ||||| | ||| || | ||||| Sbjct 53761 -------GCAGCCT------TCGTTATAGTCGACAAATGCAGGGAGAGCCAAAGAGGCCA 53715 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 ||||||||| || ||||| || | | | ||||| | ||||||||||||||||| Sbjct 53714 AGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAATGATCTCGGTGCAGAGGTTGG 53655 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 || |||||| ||||||| || || ||| ||| |||||| || |||||||| | Sbjct 53654 AGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAA 53595 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 |||||||||| || ||||| |||||| | |||| || ||| || | | || Sbjct 53594 GCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATAGAGTACCACAGCTTCTGAG 53535 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 | || ||| ||||| |||| || || ||| || ||||| |||||||| | Sbjct 53534 CTCGGATAGTCTTGCGACCCTTTCCTTCCTTCTCATACTTCTCATACAGCGCCTCGAATT 53475 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 | ||| || || | ||||| ||||| |||||||| | | |||| || Sbjct 53474 CTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATCAAAGTCCAGTCCA 53415 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 | | || || | || |||||| || || ||||||||||| || |||| ||||| | Sbjct 53414 AGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCAC 53355 Query 245052 TGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGA 245111 || | ||| ||| ||| |||||| | || || | || ||||| || || Sbjct 53354 GGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAAACATCAG 53295 Query 245112 CGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCA 245171 ||||||| ||||| | ||||| || | ||| || || ||||||||||| |||||||| | Sbjct 53294 CGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCGCTTGTTGCCACCCTGGTCGA 53235 Query 245172 CCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 | || | || | |||||||| || || | || | || ||||| ||| ||| Sbjct 53234 CGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCG 53176 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 |||||||| ||||| | |||| || | | || | || | || ||| | || Sbjct 53175 TTGGTGCCGGCAATGTAAGAGCCCGTGGCACGGATACGGTGGACGTTCAGGCCGATACCA 53116 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 || || |||||| || | ||| || |||| | ||||| || ||||| |||||| Sbjct 53115 CCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGTCGTAGATACCCTCAATGCTG 53056 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCTGCACGAGTT 245409 || |||||||| | ||| ||||| |||||||||| | ||||| ||| | | | ||| Sbjct 53055 TCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT-GAGCTTGCGGGGTACCAGCGTT 52997 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAG 245469 ||| ||||||||| ||| ||||||||| | ||| || | || ||| |||| || Sbjct 52996 GAAGAGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGACATGAGGTGGTATGTCTCAAG 52937 Query 245470 CAGAGCGTCGATGTTGTCGCC 245490 | | || |||||||| || Sbjct 52936 GACACGCTCAATGTTGTCTCC 52916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334702584560