Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 100 6e-16 >seq3 Length=984773 Score = 100 bits (110), Expect = 6e-16 Identities = 557/872 (64%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 242896 ATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTG 242955 || ||| | ||||| || ||||| | ||| |||| |||||| ||||||| || |||| Sbjct 414551 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 414610 Query 242956 AACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGA-ACGTCATTTCATCAA 243014 | || | ||||||| | | || || || ||||| | || | |||||| Sbjct 414611 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGT-ACTTCATCTC 414669 Query 243015 ACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAA 243074 ||||| || | || || || | |||||| || ||||| | || || ||| | | | Sbjct 414670 TCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTG--GTCGAG 414727 Query 243075 CTTT--AGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTC 243132 | || || | || || | | || ||||| || || || | || ||| | | Sbjct 414728 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 414787 Query 243133 AACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGATGAA 243192 | || ||||| || || || |||| || |||||| | || ||| | || Sbjct 414788 ATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACC--TACGTCA-AGGAG 414844 Query 243193 CA-AG--AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAG 243249 || || |||| | | | || ||| ||||||| || | |||||| ||| || ||| Sbjct 414845 CACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAG 414904 Query 243250 GCAAAATGGGCTCAGAAGTGGCT--AGAACCCGGTAAAT-CATTTGCTGAGCGTCTCGTC 243306 || | ||||| |||||| | || || || | | ||||| |||||||||| Sbjct 414905 GCCGACTGGGCCATCAAGTGGATTCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTT 414964 Query 243307 GCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCG-GGAGTTTCTGCG-CCATCTTTTGGC 243364 |||| | |||||| ||||| || | ||| | |||| | ||| ||||||| |||| Sbjct 414965 GCCTTTGCTGCCGTTGAGGGTAT-CT-TCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGC 415022 Query 243365 TGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACG 243424 | ||| | |||| | ||||||||||| | || |||||| | ||| ||| || | Sbjct 415023 TCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGATG 415082 Query 243425 AGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAA-GCTACCA 243483 |||| || ||| | || | | || | | || | || ||||| || | || Sbjct 415083 AGGGTCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCA 415142 Query 243484 TTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGC 243543 || | || | |||||||| || || || || ||| |||| ||| | | Sbjct 415143 AG-GAGATTATCCGTGAGATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACC 415201 Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| | || || || | ||||||||| | || ||| |||||||| || Sbjct 415202 GAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACGCTGATGAAGCAGTACATTGAG 415261 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 || || ||||| || | || |||| || || | ||||| | ||||| ||| ||| Sbjct 415262 TTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCAACGAGAAGATCTACAAGTCCTCCAAC 415321 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 ||||| | ||| |||||| ||| || || || || || ||||||||||| ||||| Sbjct 415322 CCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGC 415381 Query 243724 GTCAGTGATTATCAACGCCCTGGTGTGATGAA 243755 || | || ||||| ||||||| ||||| Sbjct 415382 GTTGGCGAGTATCAGAAGGCTGGTGTCATGAA 415413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874616222350