Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9 215 6e-51 seq3 147 3e-30 >seq9 Length=716796 Score = 215 bits (238), Expect = 6e-51 Identities = 1055/1664 (63%), Gaps = 35/1664 (2%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| || ||| ||| ||||| | || ||||||||||| || |||||||| | Sbjct 54632 TGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGTAGGTAGTACATGCCAGTCTTGAGAC 54573 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 | |||||||| || | ||||| || | |||| | ||| ||| | |||| Sbjct 54572 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTGATCTTGCCCATTGTGGGATCCTTCATGT 54513 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | ||||| ||||| || || ||||| ||||| || || | ||| | | | Sbjct 54512 GAATGTTCAAGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 54453 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 | | ||| ||||| ||||| |||| ||| ||| || || | || || | Sbjct 54452 TGTGACGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 54393 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 113864 || || ||||| || || | | | ||| | | ||||||| | | |||| Sbjct 54392 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 54333 Query 113865 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCAC 113921 |||| ||| | | ||||||| |||| || |||||||| ||||| | Sbjct 54332 AGAGGCCAGTATCGACAAGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAACTCGC 54276 Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981 | || ||| |||| | | ||||| |||| ||||| ||||| ||||| |||||||| | Sbjct 54275 CAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGC 54216 Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 114041 | | ||| |||| ||| ||| ||||||||||| || | ||| | ||||| || | || Sbjct 54215 CTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATAC 54156 Query 114042 CCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 114101 | | ||| | || | |||||||||| |||||| || || | | | || | | Sbjct 54155 CGTGCTCCTTGATTTGCTCCTTGAGGGAGTCCCACTCCCAGAGGTCAGTGGGCTTGACGT 54096 Query 114102 GCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 ||||| ||||||||||| || |||| ||||| || ||||||| |||| ||| || | Sbjct 54095 CCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAGG 54036 Query 114162 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 114221 | ||||| | || || | || | ||||| ||||| ||||| || || ||||||| Sbjct 54035 GACCCTCGATCTTGGCAATCTCCATGGATGCCTCAAGGGCAGCGTGGTAGATAGTCTCAA 53976 Query 114222 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATA 114280 | || | |||| | || ||| || || || | || | ||| | | Sbjct 53975 AGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAGGGAAGAC-GCAGAGCGAGG 53917 Query 114281 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 114340 || | || || ||||| |||||||||| ||||| || || || | | || || Sbjct 53916 AAAGCGTCAGCAAGACCCTGGACACCGACACCAATGGGTCGGTGGCGGCTGTTGCTGTTG 53857 Query 114341 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 114400 ||||| || ||||| || | ||| |||||| | | || || || | || Sbjct 53856 CGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACC 53797 Query 114401 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATAC 114460 ||||| || | || |||||||| | | | ||| | | || | | | |||| | Sbjct 53796 ACCTTGGTAACGTCGTGAAGCTTCTTGAAGTCATAGCAGCCTTCGTTATAGTCGACAAAT 53737 Query 114461 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 114520 ||| || || | || |||| || || |||| | ||| || ||| |||||| Sbjct 53736 GCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCA 53677 Query 114521 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 114580 || || || || || | || || || ||||| |||| |||||| || || ||| Sbjct 53676 ATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTA 53617 Query 114581 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 114640 ||| || |||||||||||||||||| | || | || ||||| || |||| || || Sbjct 53616 CGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGG 53557 Query 114641 ATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC---CCCTCCTCCTC 114696 |||| | ||| | | || | ||| | | ||| ||| | | || |||| ||| Sbjct 53556 ATAGAGTACCACAGCTTCTG-AGCTCGGATAGT---CTTGCGACCCTTTCCTTCCTTCTC 53501 Query 114697 GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT 114756 ||||| || || || || || ||||| || | || | || || || || || Sbjct 53500 ATACTTCTCATACAGCGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGG-GCATT 53442 Query 114757 -ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACACGCTTCATGAAGAGGTC 114813 | ||||| | | || ||| | ||| || |||||||||||||||||| || || Sbjct 53441 CGTTAGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGATC 53384 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 114873 |||||||||||||| ||| || || || || | ||||| | || || || Sbjct 53383 AGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTT 53324 Query 114874 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 114933 || | || | || || | | ||| |||||||| || || ||||| | || | | Sbjct 53323 GCGGAGGTCAAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGC 53264 Query 114934 CCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCG 114987 || | | || ||| |||||| || || || || ||| || || || || Sbjct 53263 TCC---AGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCG 53207 Query 114988 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC 115047 |||||| || |||||||| | || || || || || ||| ||| |||| Sbjct 53206 AAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTGGC 53147 Query 115048 TCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 115107 | || | |||| || || || ||||| || ||| ||| || || || || Sbjct 53146 ACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGT 53087 Query 115108 CGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCT 115167 | | | | || ||||||| || || || ||| |||| | | | |||||||| Sbjct 53086 CTTCAAAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGA 53027 Query 115168 CGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGG 115209 |||| || | ||| || ||||||||||||||||| || || Sbjct 53026 GGACAGCTGAG--CTTGCGGGGTACCAGCGTTGAAGAGAGTGGG 52985 >seq3 Length=984773 Score = 147 bits (162), Expect = 3e-30 Identities = 530/814 (65%), Gaps = 19/814 (2%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || ||||| ||||||||||||||||| ||||| ||| ||| | ||| |||||||| Sbjct 415392 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 415333 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGACG 125877 || || || ||||| || || | || | | | || | | ||| ||||| Sbjct 415332 AAGTCGAAGGGGTTGGAGGACTTGTAGATCTTCTCGTTGCCGAGAGCGAC-GAGCAGACG 415274 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||| | ||| |||||||||||| |||| | | |||||| || | || ||| Sbjct 415273 ATCGGCGACAAACTCAATGTACTGCTTCATCAGCGTGGCGTTCATGCCCAGCAGAGCACA 415214 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 ||||| || || | |||| ||| ||| ||| ||||| || | ||| | | Sbjct 415213 GGGGAGAGCCTCGGTCAAGAACTCCTGCTCGATTCTGACGGCATCAGTGATGATCTCACG 415154 Query 125998 AATGGTGTCCACCCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACTC 126054 || | ||| | | | || || || | || || || | |||| || Sbjct 415153 GATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGG--CAAG-CAAAGTC 415097 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| |||||||| ||||| ||||| || || || |||||| ||| || |||||||| Sbjct 415096 GGTGTGCAGACCCTCATCACGAGAGATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAG 415037 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| | |||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 415036 ACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAAC 414977 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCACTTCA 126233 || || |||| |||||||| |||||||| | | | |||| | || |||||| | Sbjct 414976 GGCAGCAAAGGCAACGAGACGCTGGGCAAAGGA-AGAGTCCTTGTCCTGAATCCACTTGA 414918 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-GTTCC 126292 | ||||| | ||||| || || || || | ||||| || || | |||| || | Sbjct 414917 TGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGC 414858 Query 126293 TTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 126351 | | | ||| | || |||| ||| | || ||||| || || || ||| ||| Sbjct 414857 TGCGCTGGCTG--TGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTAGGTCTCGGAGTG 414800 Query 126352 GACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 126410 || | | ||| || | ||| | ||||||| | || || ||| ||||| |||| Sbjct 414799 GATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCT 414741 Query 126411 CATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 126470 | || ||| | | ||||| ||||| || ||||| ||||||| || | Sbjct 414740 CGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGG 414681 Query 126471 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAA 126527 ||||||| | ||||| | || || | ||||||| || | |||||||||| | Sbjct 414680 CCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCA 414621 Query 126528 GATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 ||||||| || ||||| | |||||| || ||||| Sbjct 414620 GATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 414587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350755103480