Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq9 246 3e-60 >seq9 Length=716796 Score = 246 bits (272), Expect = 3e-60 Identities = 1070/1673 (64%), Gaps = 42/1673 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| || || ||||| || | |||||| Sbjct 52802 AACTACCAATACTTCGGCTTCAAGACACTGGAGCGATCATATCTCCTGAAACTTGATGGC 52861 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||||| || || || | ||||| || || | || || || || Sbjct 52862 AAGATTGTTGAGCGACCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGAC 52921 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 |||| | ||| | | | | | |||| |||| | |||| ||| Sbjct 52922 AACATTGAGCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAGTTCTTTACCCATGCC 52981 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 |||| || || |||||||| || |||||| | ||| |||| || || |||||| || Sbjct 52982 TCCCCCACTCTCTTCAACGCTGGTACCCCGCAAGCTCAGCTGTCCTCATGCTTCCTGGTG 53041 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| |||| ||| || || | ||||| | ||| ||||| | || Sbjct 53042 GACATGAAGGACGACAGCATTGAGGGTATCTACGACACTTTGAAGACATGTGCCATGATT 53101 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCT 94072 || || || || || ||||| | | |||||| |||| ||||||| ||| || | Sbjct 53102 TCCAAGATGGCTGGTGGTATCGGCCTGAACGTCCAC--CGTATCCGTGCCACGGGCTCTT 53159 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| ||| ||||| || ||||||||||| || |||| ||||| || |||||||||| Sbjct 53160 ACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACA 53219 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || | ||||| ||||||||||| | | | || | || || |||| | Sbjct 53220 ACACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGAGCCTTTGCCATCTACC 53279 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||| || || | ||| | ||||| || |||||||||||||| | Sbjct 53280 TCGAGCCTTGGCACGCTGATGTTTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGG 53339 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | ||| | ||||| ||| |||||||||| | || || || || ||||| | Sbjct 53340 AAGAGGTCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGC 53399 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| |||| | ||||| | | | || || || ||||| || || || | | Sbjct 53400 GTGTTGAGAAGAACTTGGACTGGACTTTGATGTGCCCTAACGAATGCCCTGGCCTTGCTG 53459 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 || | ||| || || | |||||| || || | | || |||| Sbjct 53460 ACTGCTATGGCGAAGAATTCGAGGCGCTGTATGAGAAGTATGAGAAGGAAGGAAAGGGTC 53519 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| ||| ||| |||||||||| | ||| | || | ||| ||||| | Sbjct 53520 GCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCTATCCTAGAGGCCCAGACTGAGACTG 53579 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | | |||| ||| | | |||||| || |||| ||| ||||||| || |||| | Sbjct 53580 GCAACCCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGG 53639 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | ||| ||||| || || ||||||||||| | ||||| || | || |||||| Sbjct 53640 GAACCATCCGCAGCTCCAACCTCTGCACCGAGATCATTGAGTACTCTGCCCCTGACGAGG 53699 Query 94613 TTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGT 94672 | ||||| || ||| ||| ||| | || | | || || ||| ||| | Sbjct 53700 TCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCATTTGT-CGA-----CTATA--A 53751 Query 94673 CTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTTCGCGGGAAGGATGGTCTTGAAC 94731 | | ||| | | || | || ||||| || || | | || | ||| ||| Sbjct 53752 CGAAGGCTGC-TATGACTTCAAGAAGCTTCACGACGTTACCAAGGTGG-TTGTCCGTAAC 53809 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791 || ||| | | ||||| ||||| ||||||||| | |||||| ||| ||| Sbjct 53810 CTCAACCGCATCATCGATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGCAACAGC 53869 Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851 || || ||||| || |||| ||||||||| | || ||||| | | ||||| Sbjct 53870 CGCCACCGACCCATTGGTGTCGGTGTCCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGT 53929 Query 94852 CTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTTA 94910 || |||| ||| || ||| || ||| | ||||| | | || || || | || || Sbjct 53930 CTTCCCTTCGAATCACCCGAAGCTCGCGAG-TTGAACAAGCAAATCTTTGAGACTATCTA 53988 Query 94911 TTACGGGGCCATGAAACAATCCGTCCA-CTTGGCCAGATCGGACGGCGGGCCACACGAAT 94969 ||| ||| | | |||| | | ||| | |||| || || || | || | Sbjct 53989 CCACGCTGCCCTTGAGGCATCCATGGAGATTGCCAAGAT----CGAGGGTCCCTATGAGT 54044 Query 94970 CGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | ||| ||||| | ||| ||| |||||| | ||||| ||| | |||| || | Sbjct 54045 CATTCAAGGGATCACCCGCCTCTGAA---GGCATTCTCCAGTTTGACTTGTGGGACGTCA 54101 Query 95027 AGCCCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084 ||||| | | || | || ||||| ||| | | || | | | | |||||| | Sbjct 54102 AGCCCACTGACCTCTGGGAGTGGGACTCCCTCAAGGAGC--AAATCAAGGAGCACGGTAT 54159 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 ||| |||| || |||||||||||||| ||| ||| | |||||||| ||||| Sbjct 54160 TCGCAACAGTTTGCTCGTCGCCCCCATGCCCACTGCCAGCACTTCCCAGATCCTAGGCAA 54219 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 ||| || | ||||| |||| |||||||||| | ||| | | || || || || || || Sbjct 54220 CAATGAATGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGA 54279 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGGTG 95263 |||| || ||||| || || | || | || || || || | ||| | Sbjct 54280 GTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACT-GGCCTCTGGTCCG 54338 Query 95264 ACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 | | ||||||| | |||| | ||||| || |||||||||| || | Sbjct 54339 ATGCTATGAAGAACCGCATCATTGCT----GAGAACGGTTCTATCCAGAACATTCCCAAC 54394 Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || | ||||||||||| || |||||||| || ||||||||| | ||||| Sbjct 54395 ATTCCCGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATCTCTCAGCG 54447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720843880760