Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 167 2e-36 seq25 113 4e-20 seq24 104 2e-17 >seq3 Length=984773 Score = 167 bits (184), Expect = 2e-36 Identities = 506/771 (66%), Gaps = 33/771 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| || ||| |||| || Sbjct 414644 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGC 414703 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGG-AACGTTCCGGAACTCGAGGCGCA 52204 || || ||| ||||| ||||| | |||||| | |||| | | |||||| | Sbjct 414704 ATTGTCAACGAGAACCTGGTCGAG-CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCG 414762 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || ||| || | | || ||| | | ||| | |||| ||| |||||| Sbjct 414763 ATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCTCTGCT 414822 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCA---CGAGCGCGACACGCTGCTGAATGCGTTCGA 52321 ||| || || || ||| ||||| | ||||| | || | || || | || Sbjct 414823 CATCGA-CACCTACGTCAAG--GAGCACAGCCAGCGCAGCTACCTCTTCAACGCCATTGA 414879 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 | | | || ||| ||||||| ||||| | ||||| || |||||||| || | | Sbjct 414880 GACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGGA 414939 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | | | | ||| |||| | || ||||| || || ||||| | || || ||| Sbjct 414940 CTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGG 414999 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 ||||||| ||||||| | | || | || ||| | ||||| |||||||| ||| Sbjct 415000 AGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTC 415059 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACT- 52557 ||||||| | || || || || || || |||||||| |||||||| ||| ||| ||| Sbjct 415060 CAACGAGCTAATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTGCTCCACTC 415119 Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCA 52611 || |||| |||| | | | ||| | |||| |||| || ||| Sbjct 415120 TCACCTGAAGAACCGCGCCAGCAA------------GGAGATTATCCGTGAG-ATCATCA 415166 Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 || || || ||||| ||||||| || || | || || || | ||||||| Sbjct 415167 CTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGG 415226 Query 52672 GCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGC 52731 |||||||||| | ||| ||||||| |||||||| || ||||||||| | || Sbjct 415227 GCATGAACGCCACGCTGATGAAGCAGTACATTGAGTTTGTCGCCGATCGTCTGCTCGTCG 415286 Query 52732 AGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 ||| |||| | | ||| || ||| | ||| || || || || ||| | ||||| Sbjct 415287 CTCTC-GGCAACGAGAAGATCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATC 415345 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 || || | |||||||||||||| ||||||||||| || ||||||||| || Sbjct 415346 TCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTATCAG 415396 >seq25 Length=464062 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || ||||||||||||||| Sbjct 387947 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 387888 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || ||||| | | |||| | ||||| |||||||| || Sbjct 387887 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 387828 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 387827 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 387768 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || || || || || || ||||||||||| Sbjct 387767 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 >seq24 Length=472585 Score = 104 bits (114), Expect = 2e-17 Identities = 144/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | Sbjct 84480 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 84421 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| |||||||| ||||| ||||| || || || ||||| ||| | || | || Sbjct 84420 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTCAC 84362 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| ||||||||||||| || | || || || || || || | Sbjct 84361 ATTG-TCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCT 84303 Query 138599 TTACAAAAATCTGCATGG 138616 | || || || ||||||| Sbjct 84302 TGACGAAGATTTGCATGG 84285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || || || | | | |||||| || |||||||||||||| Sbjct 85027 GCCACCACGCAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 84968 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || ||||| | |||| || ||||| ||||| || || Sbjct 84967 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCAGGGGG 84908 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | |||| || | ||| || | ||| || | |||||| Sbjct 84907 AATGCCCTCCTTGTC-CTGAATCTTTGACTTGACGTTG-TCGATGGTATCAGATGACTCC 84850 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || || |||| ||| || ||||| |||||||| Sbjct 84849 ACTTCTAGTGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 84800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260036550320