Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 141 9e-29 seq25 134 1e-26 seq24 114 1e-20 seq11 96.9 3e-15 >seq3 Length=984773 Score = 141 bits (156), Expect = 9e-29 Identities = 475/728 (65%), Gaps = 21/728 (3%) Strand=Plus/Plus Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920 ||||||||||||| ||| ||||| |||| |||||| ||| | |||||| | |||| Sbjct 414678 TGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGTTT-CAGC 414736 Query 46921 GCACCGTGCCCGAACTG-GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979 | | | || | ||||| | | ||| ||| | || | | || || | Sbjct 414737 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAAC 414796 Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGCA 47038 |||||| | || | ||| || ||||| || || | |||| || | | || ||| Sbjct 414797 ATCCACTCCGAGACCTACTCTCTGCTCATCGACACCTACGTCAAGGA-GCACAGCCAGCG 414855 Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 ||| || || || |||| | |||| ||| || ||| | |||| |||||||| |||| Sbjct 414856 CAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGG 414914 Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157 |||| |||| ||| | || | || | | ||| | ||| | | || || || Sbjct 414915 CCATCAAGTGGATTCAGGACAAGGACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTG 414974 Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217 ||| ||||| |||||||| || |||||| | || || | | || | | || Sbjct 414975 CCGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAG 415034 Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277 | | ||||| ||||| || || ||||||||||||||| | || || || ||||||| Sbjct 415035 GTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTAATCTCTCGTGATGAGGGTCTGCACA 415094 Query 47278 CCAACTTTGCCTGTCT---CTACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGC 47331 || ||||||| || || | ||| || | ||| || | | ||| | | Sbjct 415095 CCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGAGATTAT-- 415152 Query 47332 CCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGG 47391 |||| || || | | || |||||| || ||| |||||| || |||||| Sbjct 415153 ---CCGTGAG----ATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACCGAGG 415205 Query 47392 CTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451 |||| ||| || | |||| |||||||| | |||||| ||||||| || |||| Sbjct 415206 CTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACGCTGATGAAGCAGTACATTGAGTTTG 415265 Query 47452 TCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCAT 47511 ||||||| || |||||||| || | ||||| ||| | || || || | Sbjct 415266 TCGCCGATCGTCTGCTCGTCGCTCTCGGCAACGAGAAGATCTACAAGTCCTCCAACCCCT 415325 Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 |||| || ||| | ||||| || || | |||||||||||||| |||||||||||||| | Sbjct 415326 TCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTG 415385 Query 47572 GCGAATAT 47579 |||| ||| Sbjct 415386 GCGAGTAT 415393 >seq25 Length=464062 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | || ||||| || || || ||||| ||| Sbjct 387950 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 387891 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || ||||| ||| || ||||| || ||||| |||||||||||||||| || || Sbjct 387890 CTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGG 387831 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| Sbjct 387830 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTC 387772 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 387771 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 387721 >seq24 Length=472585 Score = 114 bits (126), Expect = 1e-20 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || |||||| || || ||||| || |||||| | Sbjct 84991 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 84932 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GT 127039 ||| | |||||||| || || || ||||||||||||||| ||| | | || ||||| || Sbjct 84931 GATAAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC-TGAATCTTTGACTTGACGT 84873 Query 127040 TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 || |||| ||| || | ||| ||||| | || | || |||||||||| ||| || Sbjct 84872 TG-TCGATGGTATCAGATGACTCCACTTCTAGTGTGATGGTCTTGCCGGTCAAAGTCTTG 84814 Query 127100 ACAAAAATCTGCAT 127113 ||||| |||||||| Sbjct 84813 ACAAAGATCTGCAT 84800 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || |||||||||| || |||||| || || ||||| || ||| Sbjct 84768 GTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTACCA 84709 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| |||||||| || |||||||||||| ||| || |||| Sbjct 84708 GCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 84649 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| || | |||||| |||| || | || ||||| || || || Sbjct 84648 ACGTTG-TCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGT 84590 Query 127096 TTTTAC 127101 || || Sbjct 84589 CTTGAC 84584 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || || || ||| || || || || ||| Sbjct 84483 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 84424 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || ||||| ||||||||||||||| || || ||| Sbjct 84423 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 84364 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || |||| || | || |||||||| || || Sbjct 84363 ACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 84304 Query 127097 TTTACAAAAATCTGCATGG 127115 || || || || ||||||| Sbjct 84303 TTGACGAAGATTTGCATGG 84285 >seq11 Length=641957 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| ||||||||||||||||||| || || || |||||||| Sbjct 26507 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGAATTCCCTCCTT 26448 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| ||||| | |||||| || | ||| | Sbjct 26447 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGAT 26388 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 26387 GGTCTTGCCCGTCAGGGTCTTCACGAAA 26360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498535427440